Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 0.0e+00 2655.9 1398 100.0
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 0.0e+00 1502.3 1485 59.7
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 0.0e+00 1451.0 1440 59.3
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 1.8e-260 903.7 1448 44.3
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 1.5e-259 900.6 1496 42.6
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 3.2e-249 866.3 1477 41.2
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 5.1e-247 859.0 1448 41.7
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 5.1e-247 859.0 1461 41.4
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 2.4e-244 850.1 1475 41.9
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 1.1e-233 814.7 1475 39.3
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.4e-228 797.0 1452 40.4
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 3.1e-228 796.6 1462 39.1
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 9.0e-228 795.0 1515 38.9
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 3.8e-226 789.6 1460 40.0
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 5.5e-225 785.8 1460 39.7
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 7.9e-224 781.9 1458 39.6
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 3.3e-222 776.5 1427 39.5
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 9.7e-222 775.0 1444 38.9
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.2e-221 773.9 1445 39.7
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 8.5e-218 761.9 1452 39.1
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 5.5e-217 759.2 1506 38.8
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.3e-215 753.8 1453 39.5
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 2.0e-211 740.7 1461 38.1
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 4.8e-205 719.5 1479 37.6
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 2.7e-203 713.8 1548 37.0
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 4.5e-203 713.0 1456 38.2
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 3.2e-201 706.8 1423 39.1
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 1.0e-191 675.2 1554 35.1
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 1.3e-189 668.3 1478 37.2
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 1.7e-189 667.9 989 42.8
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 7.0e-188 662.5 1336 37.1
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 8.6e-186 655.6 1463 36.2
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 1.5e-182 644.8 1395 36.9
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 2.4e-180 637.5 1462 36.3
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 8.6e-178 629.0 1324 36.9
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 1.1e-177 628.6 1445 34.7
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 9.5e-177 625.5 1419 36.2
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 4.4e-174 616.7 1430 35.1
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 1.6e-171 608.2 1590 33.5
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 3.5e-171 607.1 1465 34.6
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 7.5e-166 589.3 1402 35.4
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 7.5e-166 589.3 1402 35.4
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 9.8e-166 589.0 1403 34.1
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 6.4e-165 586.3 1403 34.0
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 4.3e-161 573.5 1465 34.3
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 1.7e-157 561.6 1420 33.8
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 8.4e-157 559.3 570 56.3
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 5.1e-154 550.1 1420 33.5
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 2.0e-150 538.1 1346 34.0
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 3.6e-144 517.3 1445 33.1
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 1.8e-143 515.0 1456 32.6
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.9e-143 513.1 1214 34.7
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 2.0e-142 511.5 1453 32.3
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 3.4e-142 510.8 1421 31.8
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 7.9e-139 499.6 1463 31.6
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 1.3e-136 492.3 1452 32.9
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 2.1e-136 491.5 1439 31.8
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 1.8e-135 488.4 1448 31.1
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.1e-132 479.2 1412 32.4
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 1.9e-132 478.4 1436 31.7
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 5.5e-132 476.9 1408 32.2
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.0e-130 472.6 1048 35.9
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.0e-130 471.1 1042 36.2
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 5.3e-127 460.3 1403 31.5
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.3e-122 445.7 1439 31.0
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 3.0e-122 444.5 1421 30.4
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 9.7e-121 439.5 1422 31.4
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 4.8e-120 437.2 1446 31.2
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 6.3e-120 436.8 1427 31.1
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 4.5e-118 430.6 1272 31.1
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 1.3e-117 429.1 1424 30.7
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 6.5e-117 426.8 1415 30.4
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 6.5e-117 426.8 1415 30.4
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 2.5e-116 424.9 1416 30.4
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 2.5e-116 424.9 1435 30.1
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 4.2e-116 424.1 1635 28.9
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 1.3e-114 419.1 1417 30.0
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 9.7e-113 412.9 1408 30.8
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 1.7e-112 412.1 1422 30.0
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 2.2e-112 411.8 1415 29.7
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 5.9e-110 403.7 902 36.8
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 7.7e-110 403.3 1434 29.5
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.2e-108 397.9 1497 28.8
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 2.6e-105 388.3 1029 31.7
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 1.3e-104 386.0 1440 30.2
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.4e-100 372.5 361 56.2
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.5e-100 371.7 1489 27.5
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 5.7e-97 360.5 1220 29.7
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 7.4e-97 360.1 1394 28.2
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 9.1e-95 353.2 1481 29.3
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.6e-94 352.4 517 42.6
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 2.6e-94 351.7 511 42.7
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.3e-93 349.4 494 44.3
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.1e-92 346.3 760 35.5
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 1.2e-91 342.8 1319 28.8
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 3.1e-87 328.2 494 42.3
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.1e-87 328.2 916 33.0
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 5.0e-85 320.9 1445 27.5
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 1.3e-77 296.2 1417 26.6
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 2.3e-74 285.4 1615 25.6
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 5.4e-71 274.2 652 33.0
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 7.0e-71 273.9 429 40.3
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 4.5e-70 271.2 295 52.2
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 5.6e-68 264.2 1454 25.7
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 6.8e-66 257.3 328 44.2
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 8.9e-66 256.9 408 40.0
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.5e-60 238.8 272 48.5
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 7.5e-57 227.3 1452 25.1
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 2.1e-54 219.2 461 30.8
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 2.1e-51 209.1 149 71.8
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 9.2e-47 193.7 287 48.1
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 4.6e-46 191.4 501 31.9
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.3e-45 189.9 256 52.3
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 1.1e-44 186.8 145 60.7
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 7.8e-38 164.1 299 41.8
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 1.8e-34 152.9 155 51.0
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 2.6e-33 149.1 273 40.3
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 5.8e-33 147.9 570 28.1
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 1.1e-26 127.1 130 56.9
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 3.8e-24 118.6 123 49.6
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 1.8e-21 109.8 258 37.6
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 1.8e-18 99.8 111 53.2
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 3.8e-16 92.0 88 54.5
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.1e-15 90.5 80 58.8
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 1.9e-15 89.7 251 35.9
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 2.4e-15 89.4 152 36.8
MD09G1132300 Malus domestica HOM05D005171 ORTHO05D006343 4.6e-14 85.1 200 33.5
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 7.9e-14 84.3 125 41.6
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 2.1e-11 76.3 126 47.6
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 2.1e-11 76.3 126 47.6
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 2.8e-11 75.9 87 42.5
CDE02G3322 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 5.3e-10 71.6 134 40.3
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 7.6e-09 67.8 259 29.0
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.2e-06 60.5 114 32.5
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.7e-06 59.3 120 40.0
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 3.5e-06 58.9 144 39.6
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.5e-06 58.9 117 37.6


User provided reference genes

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