Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 2.5e-133 478.8 242 100.0
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 7.1e-96 354.4 241 77.2
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 1.3e-86 323.6 243 64.2
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 9.6e-85 317.4 242 61.2
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 8.1e-84 314.3 243 62.1
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 5.4e-80 301.6 242 61.2
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 5.4e-80 301.6 242 60.3
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 1.2e-79 300.4 242 62.0
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 2.7e-79 299.3 243 60.5
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 2.7e-79 299.3 242 61.6
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 2.3e-78 296.2 242 58.7
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 6.6e-78 294.7 242 57.9
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 1.1e-77 293.9 242 59.9
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.5e-77 293.5 242 64.9
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 1.5e-77 293.5 243 58.8
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 3.3e-77 292.4 242 61.2
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 4.3e-77 292.0 242 59.9
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 2.8e-76 289.3 246 57.3
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 3.6e-76 288.9 243 58.8
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.1e-75 287.3 242 59.1
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.4e-75 287.0 242 58.3
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 4.0e-75 285.4 242 60.3
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 5.3e-75 285.0 246 56.5
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 9.0e-75 284.3 243 58.0
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 1.7e-73 280.0 242 58.7
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 1.7e-73 280.0 243 58.8
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 7.1e-72 274.6 242 58.3
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 4.6e-71 271.9 244 54.1
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 1.3e-70 270.4 243 54.3
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 3.3e-69 265.8 243 53.1
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 6.2e-68 261.5 242 53.3
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 1.1e-67 260.8 242 54.1
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 1.4e-67 260.4 242 53.7
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 1.8e-67 260.0 242 54.1
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 2.4e-67 259.6 242 53.3
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 3.1e-67 259.2 242 50.4
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 6.9e-67 258.1 242 53.3
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 9.0e-67 257.7 242 53.3
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 1.2e-66 257.3 242 53.3
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 1.5e-66 256.9 242 53.3
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 2.6e-66 256.1 242 55.4
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 4.5e-66 255.4 242 52.1
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 4.5e-66 255.4 242 52.1
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 1.0e-65 254.2 242 51.2
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.0e-65 254.2 244 52.9
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 1.3e-65 253.8 242 50.8
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 1.3e-65 253.8 242 51.7
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 1.3e-65 253.8 242 50.8
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 2.2e-65 253.1 242 49.6
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 2.2e-65 253.1 242 50.4
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 2.2e-65 253.1 242 50.0
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 2.9e-65 252.7 242 51.7
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 3.8e-65 252.3 242 50.8
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.4e-64 250.4 291 45.7
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 5.5e-64 248.4 244 50.4
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 7.9e-63 244.6 242 52.5
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 1.0e-62 244.2 242 49.2
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 1.3e-62 243.8 220 55.9
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 3.0e-62 242.7 244 51.2
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 3.9e-62 242.3 244 51.2
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 1.1e-61 240.7 242 52.1
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 1.5e-61 240.4 244 54.1
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 1.9e-61 240.0 242 50.0
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 5.7e-61 238.4 245 49.4
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 1.6e-60 236.9 242 50.0
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 1.6e-60 236.9 243 52.3
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.1e-59 234.2 231 51.5
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 1.4e-59 233.8 265 45.7
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 1.4e-59 233.8 202 59.9
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 3.1e-59 232.6 242 48.8
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 3.4e-58 229.2 173 64.7
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 5.8e-58 228.4 189 61.9
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 1.0e-57 227.6 168 63.7
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 3.0e-54 216.1 206 53.9
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 3.3e-53 212.6 242 48.8
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 7.4e-53 211.5 242 45.9
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 1.6e-52 210.3 242 47.1
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 4.8e-52 208.8 201 52.7
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 4.8e-52 208.8 242 47.5
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 9.0e-51 204.5 245 45.7
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 1.4e-46 190.7 230 46.5
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 1.5e-45 187.2 247 40.5
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 3.3e-45 186.0 183 48.1
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 7.4e-45 184.9 242 41.7
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 4.8e-44 182.2 250 38.8
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 1.1e-43 181.0 247 38.9
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 1.8e-43 180.3 250 38.4
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 9.1e-43 177.9 250 38.4
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 3.4e-42 176.0 241 39.4
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 3.8e-41 172.6 242 38.8
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 1.1e-40 171.0 202 45.5
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 3.2e-40 169.5 250 38.8
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 3.9e-38 162.5 165 46.1
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 8.2e-36 154.8 174 42.5
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 3.5e-34 149.4 235 37.0
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.9e-32 143.7 238 38.2
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 7.0e-27 125.2 248 32.3
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 2.9e-17 93.2 93 49.5
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 7.5e-13 78.6 70 57.1
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.8e-12 76.6 71 54.9
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 1.3e-09 67.8 110 36.4
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 9.5e-08 61.6 69 46.4
Peaxi162Scf00289g00039 Petunia axillaris HOM05D007471 ORTHO05D009481 3.0e-06 56.6 78 41.0


User provided reference genes

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