Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 1.1e-26 122.9 78 100.0
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 2.1e-17 92.0 71 71.8
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 4.7e-17 90.9 72 72.2
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 4.7e-17 90.9 72 72.2
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 6.1e-17 90.5 52 90.4
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 1.0e-16 89.7 72 70.8
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 1.4e-16 89.4 50 92.0
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 1.4e-16 89.4 52 88.5
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 1.4e-16 89.4 50 92.0
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 2.3e-16 88.6 52 88.5
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 2.3e-16 88.6 52 88.5
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 2.3e-16 88.6 52 88.5
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 3.0e-16 88.2 52 86.5
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 3.0e-16 88.2 52 86.5
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 4.0e-16 87.8 54 87.0
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 6.8e-16 87.0 72 66.7
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 6.8e-16 87.0 72 73.6
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 6.8e-16 87.0 72 75.0
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 6.8e-16 87.0 72 75.0
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 6.8e-16 87.0 48 93.8
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 6.8e-16 87.0 48 93.8
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 6.8e-16 87.0 48 93.8
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 6.8e-16 87.0 52 88.5
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 6.8e-16 87.0 52 88.5
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 8.9e-16 86.7 72 65.3
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 8.9e-16 86.7 52 84.6
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 8.9e-16 86.7 52 84.6
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 8.9e-16 86.7 52 84.6
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 8.9e-16 86.7 52 84.6
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 8.9e-16 86.7 52 84.6
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.2e-15 86.3 52 86.5
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 1.2e-15 86.3 52 84.6
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 1.2e-15 86.3 52 86.5
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 1.2e-15 86.3 52 84.6
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.2e-15 86.3 52 86.5
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 1.5e-15 85.9 69 84.1
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 1.5e-15 85.9 69 84.1
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 2.0e-15 85.5 52 82.7
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 2.0e-15 85.5 47 93.6
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 2.6e-15 85.1 52 82.7
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 4.4e-15 84.3 50 88.0
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 4.4e-15 84.3 52 82.7
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 5.7e-15 84.0 52 80.8
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 5.7e-15 84.0 47 91.5
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 5.7e-15 84.0 48 89.6
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 5.7e-15 84.0 50 86.0
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 7.5e-15 83.6 52 80.8
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 7.5e-15 83.6 52 80.8
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 7.5e-15 83.6 52 80.8
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 7.5e-15 83.6 50 84.0
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 7.5e-15 83.6 50 86.0
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 9.8e-15 83.2 49 87.8
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 9.8e-15 83.2 49 85.7
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 1.7e-14 82.4 52 84.6
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 1.7e-14 82.4 52 80.8
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 2.2e-14 82.0 52 80.8
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 2.2e-14 82.0 52 80.8
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 2.9e-14 81.6 48 87.5
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 2.9e-14 81.6 52 80.8
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 2.9e-14 81.6 67 77.6
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 3.7e-14 81.3 52 80.8
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 3.7e-14 81.3 52 80.8
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 4.9e-14 80.9 52 80.8
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 6.3e-14 80.5 52 80.8
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 6.3e-14 80.5 52 80.8
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 8.3e-14 80.1 52 78.8
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 8.3e-14 80.1 47 85.1
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 8.3e-14 80.1 52 80.8
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 1.1e-13 79.7 52 78.8
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.1e-13 79.7 52 76.9
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.1e-13 79.7 52 76.9
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 1.1e-13 79.7 72 80.6
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.4e-13 79.3 46 87.0
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 2.4e-13 78.6 52 75.0
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 2.4e-13 78.6 52 75.0
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 3.2e-13 78.2 50 78.0
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 3.2e-13 78.2 50 82.0
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 4.1e-13 77.8 45 86.7
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.2e-12 76.3 43 88.4
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 1.2e-12 76.3 43 88.4
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 1.2e-12 76.3 46 84.8
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 2.0e-12 75.5 42 90.5
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 3.5e-12 74.7 49 77.6
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 5.9e-12 73.9 52 69.2
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 5.9e-12 73.9 78 71.8
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 5.9e-12 73.9 41 90.2
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 7.8e-12 73.6 46 80.4
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 7.8e-12 73.6 43 83.7
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.0e-11 73.2 49 77.6
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 1.0e-11 73.2 47 74.5
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 2.9e-11 71.6 50 78.0
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 3.9e-11 71.2 52 71.2
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 5.0e-11 70.9 38 92.1
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 6.6e-11 70.5 38 89.5
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 6.6e-11 70.5 38 89.5
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 6.6e-11 70.5 38 89.5
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 6.6e-11 70.5 38 89.5
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 6.6e-11 70.5 38 89.5
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 1.5e-10 69.3 41 82.9
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 1.5e-10 69.3 43 81.4
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 3.3e-10 68.2 43 79.1
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 4.3e-10 67.8 43 76.7
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 1.2e-09 66.2 38 86.8
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 2.1e-09 65.5 72 55.6
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 2.8e-09 65.1 35 88.6
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 4.7e-09 64.3 33 93.9
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 5.8e-07 57.4 33 81.8
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 2.2e-06 55.5 50 50.0


User provided reference genes

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