Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p064492 Quercus lobata HOM05D002012 ORTHO05D001992 3.9e-57 224.6 111 100.0
QL93p0869_0048 Quercus lobata HOM05D002012 ORTHO05D001992 5.8e-45 184.1 97 93.8
QL06p004380 Quercus lobata HOM05D002012 ORTHO05D001992 2.1e-31 139.0 80 86.2
QL09p042353 Quercus lobata HOM05D002012 ORTHO05D001992 2.1e-31 139.0 68 97.1
Cpa.g.sc87.50 Carica papaya HOM05D002012 ORTHO05D001992 3.0e-25 118.6 71 74.6
CiPaw.03G272000 Carya illinoinensis HOM05D002012 ORTHO05D001992 1.6e-23 112.8 69 73.9
Dinv43055 Davidia involucrata HOM05D002012 ORTHO05D001992 3.7e-23 111.7 71 69.0
Hma1.2p1_2051F.1_g312560 Hydrangea macrophylla HOM05D002012 ORTHO05D001992 3.7e-23 111.7 81 63.0
Atru.chr5.1958 Acer truncatum HOM05D002012 ORTHO05D001992 6.2e-23 110.9 81 64.2
CiPaw.04G191100 Carya illinoinensis HOM05D002012 ORTHO05D001992 1.8e-22 109.4 78 65.4
Cc01_g17700 Coffea canephora HOM05D002012 ORTHO05D001992 2.4e-22 109.0 68 66.2
Sabra02G0194200 Salix brachista HOM05D002012 ORTHO05D001992 3.1e-22 108.6 80 63.8
Ciclev10018880m.g Citrus clementina HOM05D002012 ORTHO05D001992 5.3e-22 107.8 71 69.0
TWI12G0950 Tripterygium wilfordii HOM05D002012 ORTHO05D001992 6.9e-22 107.5 78 65.4
ClCG06G001350 Citrullus lanatus HOM05D002012 ORTHO05D001992 1.2e-21 106.7 67 70.1
Manes.13G038800 Manihot esculenta HOM05D002012 ORTHO05D001992 1.5e-21 106.3 71 63.4
Oeu052092.1 Olea europaea HOM05D002012 ORTHO05D001992 2.6e-21 105.5 71 66.2
Potri.002G255500 Populus trichocarpa HOM05D002012 ORTHO05D001992 3.4e-21 105.1 80 62.5
Rhsim13G0040500 Rhododendron simsii HOM05D002012 ORTHO05D001992 4.5e-21 104.8 71 67.6
MD05G1186700 Malus domestica HOM05D002012 ORTHO05D001992 5.8e-21 104.4 68 69.1
Nn1g03012 Nelumbo nucifera HOM05D002012 ORTHO05D001992 7.6e-21 104.0 68 72.1
Ca_08757_v3 Cicer arietinum L. HOM05D002012 ORTHO05D001992 1.3e-20 103.2 97 52.6
Peaxi162Scf00517g00034 Petunia axillaris HOM05D002012 ORTHO05D001992 1.7e-20 102.8 71 64.8
MD10G1174800 Malus domestica HOM05D002012 ORTHO05D001992 2.2e-20 102.4 78 61.5
Actinidia30117 Actinidia chinensis HOM05D002012 ORTHO05D001992 2.9e-20 102.1 81 59.3
Sabra02G0194100 Salix brachista HOM05D002012 ORTHO05D001992 2.9e-20 102.1 80 60.0
CSS0050184 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 3.8e-20 101.7 72 62.5
MBI10_g39248_MAGBIO Magnolia biondii HOM05D002012 ORTHO05D001992 3.8e-20 101.7 71 63.4
CAN.G771.43 Capsicum annuum HOM05D002012 ORTHO05D001992 4.9e-20 101.3 71 62.0
Nitab4.5_0002538g0090 Nicotiana tabacum HOM05D002012 ORTHO05D001992 4.9e-20 101.3 71 60.6
Nitab4.5_0003167g0100 Nicotiana tabacum HOM05D002012 ORTHO05D001992 4.9e-20 101.3 71 60.6
AUR62008816 Chenopodium quinoa HOM05D002012 ORTHO05D001992 8.4e-20 100.5 82 56.1
Thecc.01G248500 Theobroma cacao HOM05D002012 ORTHO05D001992 8.4e-20 100.5 68 63.2
MELO3C022397.2 Cucumis melo HOM05D002012 ORTHO05D001992 1.1e-19 100.1 67 68.7
THA.LOC104814537 Tarenaya hassleriana HOM05D002012 ORTHO05D001992 1.1e-19 100.1 68 61.8
CsaV3_6G007290 Cucumis sativus L. HOM05D002012 ORTHO05D001992 1.4e-19 99.8 67 67.2
AUR62025424 Chenopodium quinoa HOM05D002012 ORTHO05D001992 3.2e-19 98.6 82 56.1
Sc17g0002730 Simmondsia chinensis HOM05D002012 ORTHO05D001992 3.2e-19 98.6 82 54.9
vmacro02714 Vaccinium macrocarpon HOM05D002012 ORTHO05D001992 3.2e-19 98.6 71 66.2
BcaB07g31600 Brassica carinata HOM05D002012 ORTHO05D001992 5.5e-19 97.8 71 57.7
BraA09t36925Z Brassica rapa HOM05D002012 ORTHO05D001992 5.5e-19 97.8 71 57.7
Duzib138G0128 Durio zibethinus HOM05D002012 ORTHO05D001992 5.5e-19 97.8 68 58.8
Sp3g33560 Schrenkiella parvula HOM05D002012 ORTHO05D001992 5.5e-19 97.8 71 57.7
Medtr7g099030 Medicago truncatula HOM05D002012 ORTHO05D001992 7.1e-19 97.4 87 54.0
Solyc06g083710.3 Solanum lycopersicum HOM05D002012 ORTHO05D001992 7.1e-19 97.4 71 57.7
Sopen06g035130 Solanum pennellii HOM05D002012 ORTHO05D001992 7.1e-19 97.4 71 57.7
EL10Ac7g17707 Beta vulgaris HOM05D002012 ORTHO05D001992 9.3e-19 97.1 82 53.7
Psat3g052200 Pisum sativum HOM05D002012 ORTHO05D001992 9.3e-19 97.1 84 54.8
Aqoxy5G00110 Aquilegia oxysepala HOM05D002012 ORTHO05D001992 1.2e-18 96.7 71 63.4
AL3G53270 Arabidopsis lyrata HOM05D002012 ORTHO05D001992 1.2e-18 96.7 71 57.7
BcaNung04797 Brassica carinata HOM05D002012 ORTHO05D001992 1.2e-18 96.7 71 56.3
C09p15180 Brassica napus HOM05D002012 ORTHO05D001992 1.2e-18 96.7 71 56.3
BolC9t54424H Brassica oleracea HOM05D002012 ORTHO05D001992 1.2e-18 96.7 71 56.3
Lj1g0010723 Lotus japonicus HOM05D002012 ORTHO05D001992 1.2e-18 96.7 97 51.5
SHI26793 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-18 96.7 67 65.7
TPR.G30853 Trifolium pratense HOM05D002012 ORTHO05D001992 1.2e-18 96.7 87 52.9
BcaB03g16819 Brassica carinata HOM05D002012 ORTHO05D001992 1.6e-18 96.3 71 56.3
A07p00390 Brassica napus HOM05D002012 ORTHO05D001992 1.6e-18 96.3 71 56.3
C07p00810 Brassica napus HOM05D002012 ORTHO05D001992 1.6e-18 96.3 71 56.3
BraA07t27831Z Brassica rapa HOM05D002012 ORTHO05D001992 1.6e-18 96.3 71 56.3
PGR044G2406 Punica granatum HOM05D002012 ORTHO05D001992 1.6e-18 96.3 86 57.0
A09p12820 Brassica napus HOM05D002012 ORTHO05D001992 2.1e-18 95.9 71 56.3
Hund18299 Selenicereus undatus HOM05D002012 ORTHO05D001992 2.1e-18 95.9 78 56.4
Aa31LG8G17310 Aethionema arabicum HOM05D002012 ORTHO05D001992 2.7e-18 95.5 71 56.3
Carub.0003s3466 Capsella rubella HOM05D002012 ORTHO05D001992 2.7e-18 95.5 71 56.3
THA.LOC104820065 Tarenaya hassleriana HOM05D002012 ORTHO05D001992 2.7e-18 95.5 68 58.8
Sed0023546 Sechium edule HOM05D002012 ORTHO05D001992 3.5e-18 95.1 67 64.2
AT2G20320 Arabidopsis thaliana HOM05D002012 ORTHO05D001992 4.6e-18 94.7 71 56.3
MSTRG.17526 Avicennia marina HOM05D002012 ORTHO05D001992 4.6e-18 94.7 68 60.3
CARHR110850 Cardamine hirsuta HOM05D002012 ORTHO05D001992 4.6e-18 94.7 71 56.3
Thhalv10001892m.g Eutrema salsugineum HOM05D002012 ORTHO05D001992 4.6e-18 94.7 71 56.3
Lj1C76G4 Lonicera japonica HOM05D002012 ORTHO05D001992 4.6e-18 94.7 81 58.0
Prupe.8G213500 Prunus persica HOM05D002012 ORTHO05D001992 4.6e-18 94.7 82 54.9
GSVIVG01028445001 Vitis vinifera HOM05D002012 ORTHO05D001992 4.6e-18 94.7 71 67.6
Glyma.19G170000 Glycine max HOM05D002012 ORTHO05D001992 6.0e-18 94.4 87 56.3
ATR0787G023 Amborella trichopoda HOM05D002012 ORTHO05D001992 1.0e-17 93.6 81 54.3
PSO832G4575 Papaver somniferum HOM05D002012 ORTHO05D001992 1.0e-17 93.6 78 59.0
PSO210G6626 Papaver somniferum HOM05D002012 ORTHO05D001992 1.8e-17 92.8 78 59.0
Manes.12G041101 Manihot esculenta HOM05D002012 ORTHO05D001992 2.3e-17 92.4 71 53.5
BcaC06g36715 Brassica carinata HOM05D002012 ORTHO05D001992 3.0e-17 92.0 71 54.9
BolC7t40520H Brassica oleracea HOM05D002012 ORTHO05D001992 3.0e-17 92.0 71 54.9
Glyma.03G168600 Glycine max HOM05D002012 ORTHO05D001992 3.0e-17 92.0 87 55.2
Lalb_Chr01g0019471 Lupinus albus HOM05D002012 ORTHO05D001992 3.0e-17 92.0 84 52.4
Ah.08g213680 Amaranthus hybridus HOM05D002012 ORTHO05D001992 3.9e-17 91.7 73 57.5
Hund05494 Selenicereus undatus HOM05D002012 ORTHO05D001992 3.9e-17 91.7 82 53.7
MBI07_g21078_MAGBIO Magnolia biondii HOM05D002012 ORTHO05D001992 5.1e-17 91.3 81 53.1
Ah.15g091510 Amaranthus hybridus HOM05D002012 ORTHO05D001992 1.1e-16 90.1 82 52.4
Os03g0145500 Oryza sativa ssp. japonica HOM05D002012 ORTHO05D001992 1.5e-16 89.7 77 53.2
Gohir.A11G134100 Gossypium hirsutum HOM05D002012 ORTHO05D001992 1.9e-16 89.4 68 55.9
Gohir.D11G140200 Gossypium hirsutum HOM05D002012 ORTHO05D001992 1.9e-16 89.4 68 55.9
Gorai.007G150400 Gossypium raimondii HOM05D002012 ORTHO05D001992 1.9e-16 89.4 68 55.9
FvH4_2g20280 Fragaria vesca HOM05D002012 ORTHO05D001992 5.7e-16 87.8 67 59.7
FAN24G3044 Fragaria x ananassa HOM05D002012 ORTHO05D001992 5.7e-16 87.8 67 59.7
FAN27G2338 Fragaria x ananassa HOM05D002012 ORTHO05D001992 5.7e-16 87.8 67 59.7
FAN15G2348 Fragaria x ananassa HOM05D002012 ORTHO05D001992 7.4e-16 87.4 67 58.2
VMungo1383G3347 Vigna mungo HOM05D002012 ORTHO05D001992 9.7e-16 87.0 87 50.6
Gohir.A07G203700 Gossypium hirsutum HOM05D002012 ORTHO05D001992 3.7e-15 85.1 68 51.5
Gohir.D07G209700 Gossypium hirsutum HOM05D002012 ORTHO05D001992 3.7e-15 85.1 68 51.5
Gorai.001G237100 Gossypium raimondii HOM05D002012 ORTHO05D001992 3.7e-15 85.1 68 51.5
Zm00001eb402960 Zea mays HOM05D002012 ORTHO05D001992 6.3e-15 84.3 72 54.2
arahy.Tifrunner.gnm1.ann1.NDA83R Arachis hypogaea HOM05D002012 ORTHO05D001992 1.8e-14 82.8 88 46.6
arahy.Tifrunner.gnm1.ann1.NJ6SD5 Arachis hypogaea HOM05D002012 ORTHO05D001992 2.4e-14 82.4 87 47.1
SMO228G0209 Selaginella moellendorffii HOM05D002012 ORTHO05D001992 3.1e-14 82.0 84 50.0
Phvul.001G167000 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 4.1e-14 81.6 87 47.1
RcHm_v2.0_Chr6g0286081 Rosa chinensis HOM05D002012 ORTHO05D001992 6.9e-14 80.9 64 56.2
HanXRQChr01g0014901 Helianthus annuus HOM05D002012 ORTHO05D001992 1.5e-13 79.7 71 45.1
Haze_24719 Corylus avellana HOM05D002012 ORTHO05D001992 2.0e-13 79.3 46 78.3
Migut.N02235 Erythranthe guttata HOM05D002012 ORTHO05D001992 2.0e-13 79.3 65 53.8
HPP92_022098 Vanilla planifolia HOM05D002012 ORTHO05D001992 2.0e-13 79.3 72 48.6
Lalb_Chr25g0289771 Lupinus albus HOM05D002012 ORTHO05D001992 4.5e-13 78.2 84 47.6
ECA248G2013 Erigeron canadensis HOM05D002012 ORTHO05D001992 1.0e-12 77.0 71 46.5
SalBow6G1269 Salvia bowleyana HOM05D002012 ORTHO05D001992 3.8e-12 75.1 64 54.7
SEGI_14720 Sequoiadendron giganteum HOM05D002012 ORTHO05D001992 1.1e-11 73.6 88 42.0
Mapoly0083s0022 Marchantia polymorpha HOM05D002012 ORTHO05D001992 3.2e-11 72.0 67 56.7
DCAR_026766 Daucus carota HOM05D002012 ORTHO05D001992 9.4e-11 70.5 64 48.4
AagrBONN_evm.TU.Sc2ySwM_117.1253 Anthoceros agrestis HOM05D002012 ORTHO05D001992 6.1e-10 67.8 68 47.1
SGA_v2.0_scaffold138G35174 Striga asiatica HOM05D002012 ORTHO05D001992 1.9e-08 62.8 71 42.3
Lsat_1_v5_gn_5_180120 Lactuca sativa HOM05D002012 ORTHO05D001992 2.8e-07 58.9 56 46.4
HanXRQChr03g0082891 Helianthus annuus HOM05D002012 ORTHO05D001992 1.8e-06 56.2 38 60.5
Pp3c9_25650 Physcomitrium patens HOM05D002012 ORTHO05D001992 4.1e-06 55.1 66 43.9


User provided reference genes

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