Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 1.0e-60 236.5 118 100.0
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 8.1e-21 104.0 74 73.0
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 4.0e-20 101.7 74 70.3
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.2e-19 100.1 74 70.3
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.2e-19 100.1 74 70.3
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.2e-19 100.1 74 71.6
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.5e-19 99.8 74 70.3
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 1.5e-19 99.8 74 70.3
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 2.0e-19 99.4 74 71.6
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 2.0e-19 99.4 74 71.6
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 2.6e-19 99.0 74 70.3
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 2.6e-19 99.0 75 70.7
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 3.4e-19 98.6 75 69.3
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 3.4e-19 98.6 74 68.9
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 3.4e-19 98.6 74 68.9
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 4.5e-19 98.2 74 68.9
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 7.6e-19 97.4 74 67.6
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 7.6e-19 97.4 77 64.9
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 9.9e-19 97.1 74 67.6
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 9.9e-19 97.1 74 67.6
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 9.9e-19 97.1 74 67.6
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 9.9e-19 97.1 74 67.6
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.3e-18 96.7 74 66.2
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 2.2e-18 95.9 74 67.6
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 2.2e-18 95.9 75 66.7
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 2.2e-18 95.9 74 67.6
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.2e-18 95.9 74 67.6
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.2e-18 95.9 74 67.6
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 2.2e-18 95.9 74 68.9
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 2.2e-18 95.9 74 67.6
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 2.9e-18 95.5 74 67.6
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 3.8e-18 95.1 75 65.3
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 3.8e-18 95.1 74 67.6
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 3.8e-18 95.1 74 67.6
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 3.8e-18 95.1 74 66.2
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 3.8e-18 95.1 74 66.2
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 3.8e-18 95.1 74 66.2
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 4.9e-18 94.7 74 66.2
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 4.9e-18 94.7 74 66.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 4.9e-18 94.7 74 66.2
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 4.9e-18 94.7 74 66.2
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 4.9e-18 94.7 74 66.2
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 4.9e-18 94.7 74 66.2
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 4.9e-18 94.7 75 66.7
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 6.4e-18 94.4 74 63.5
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 8.4e-18 94.0 74 66.2
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 8.4e-18 94.0 74 64.9
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 1.1e-17 93.6 74 64.9
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.1e-17 93.6 74 67.6
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.1e-17 93.6 74 67.6
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 1.1e-17 93.6 74 66.2
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 1.1e-17 93.6 75 65.3
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.1e-17 93.6 74 64.9
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.1e-17 93.6 74 64.9
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.4e-17 93.2 74 64.9
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 1.4e-17 93.2 74 66.2
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.4e-17 93.2 77 66.2
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 1.4e-17 93.2 77 66.2
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 1.4e-17 93.2 74 68.9
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.9e-17 92.8 74 67.6
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 2.4e-17 92.4 74 66.2
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 2.4e-17 92.4 74 63.5
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 2.4e-17 92.4 75 62.7
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 2.4e-17 92.4 74 64.9
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 3.2e-17 92.0 74 66.2
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 4.2e-17 91.7 75 64.0
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 5.4e-17 91.3 74 63.5
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 5.4e-17 91.3 74 63.5
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 5.4e-17 91.3 74 63.5
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 5.4e-17 91.3 75 62.7
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 5.4e-17 91.3 77 62.3
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 5.4e-17 91.3 77 62.3
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 7.1e-17 90.9 74 66.2
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 7.1e-17 90.9 74 64.9
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 7.1e-17 90.9 74 60.8
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 9.3e-17 90.5 74 64.9
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 9.3e-17 90.5 74 62.2
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.6e-16 89.7 74 62.2
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 2.1e-16 89.4 74 63.5
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.1e-16 89.4 75 61.3
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 2.1e-16 89.4 74 62.2
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 2.1e-16 89.4 74 63.5
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 2.7e-16 89.0 73 65.8
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 3.5e-16 88.6 74 63.5
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 3.5e-16 88.6 74 63.5
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 4.6e-16 88.2 76 57.9
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 7.9e-16 87.4 75 60.0
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 1.0e-15 87.0 75 61.3
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.0e-15 87.0 74 60.8
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.3e-15 86.7 74 58.1
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 1.3e-15 86.7 74 59.5
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.3e-15 86.7 74 59.5
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.3e-15 86.7 74 59.5
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 5.1e-15 84.7 73 61.6
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 6.7e-15 84.3 74 62.2
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-14 83.6 75 57.3
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.5e-14 83.2 74 59.5
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.5e-14 83.2 74 59.5
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 7.4e-14 80.9 74 52.7
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 2.8e-13 79.0 72 56.9
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.1e-12 77.0 78 56.4
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 5.3e-12 74.7 69 58.0
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 4.9e-10 68.2 71 43.7
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 4.9e-10 68.2 71 43.7
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 6.4e-10 67.8 37 86.5
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-09 67.0 78 53.8
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.1e-09 67.0 37 83.8
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 4.2e-09 65.1 40 80.0
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 7.1e-09 64.3 37 83.8
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 2.1e-08 62.8 58 56.9
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 3.5e-08 62.0 71 52.1
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 4.6e-08 61.6 75 42.7
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 4.6e-08 61.6 69 47.8
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 7.9e-08 60.8 65 47.7


User provided reference genes

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