Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 7.9e-291 1003.0 504 100.0
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 3.3e-204 715.3 549 69.4
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 4.0e-202 708.4 549 69.0
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.9e-200 702.2 554 69.9
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.2e-199 698.7 558 68.5
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 4.2e-199 698.4 557 69.3
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.3e-197 693.3 552 69.4
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.5e-196 689.9 549 69.2
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 4.3e-196 688.3 555 66.8
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 7.3e-196 687.6 553 67.8
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.3e-195 686.8 555 65.4
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.4e-194 683.3 550 68.9
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 2.4e-194 682.6 558 66.7
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.4e-194 682.6 553 66.9
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 2.4e-194 682.6 553 65.6
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 3.4e-193 678.7 553 66.9
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 3.4e-193 678.7 558 66.7
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 4.9e-192 674.9 529 69.6
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 6.4e-192 674.5 554 66.8
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 2.4e-191 672.5 553 66.2
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.2e-190 670.2 557 65.4
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.6e-190 669.8 555 65.4
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 6.2e-187 657.9 553 64.9
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-181 640.6 550 62.7
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.3e-181 640.2 564 62.4
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.3e-181 639.4 547 63.4
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.9e-181 638.6 555 62.2
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.9e-181 638.6 550 62.7
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 1.6e-179 633.3 555 61.6
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.4e-178 629.4 562 61.7
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 3.1e-178 629.0 555 62.2
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.0e-178 628.6 551 63.5
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.0e-178 628.6 551 63.5
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-177 627.1 561 61.5
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.2e-177 627.1 555 61.4
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.5e-177 626.7 551 62.1
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.2e-176 622.9 558 60.8
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 2.2e-176 622.9 561 62.0
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 7.1e-175 617.8 563 59.7
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.6e-174 616.7 567 61.4
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 2.7e-174 615.9 551 61.3
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.5e-174 615.5 559 60.3
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.5e-172 610.1 559 60.1
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 9.6e-172 607.4 551 59.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 3.7e-171 605.5 563 61.3
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 8.2e-171 604.4 556 61.5
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.4e-170 603.6 560 60.2
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.8e-170 603.2 549 60.1
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 6.9e-170 601.3 565 59.5
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.2e-169 600.5 555 59.6
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.0e-169 599.7 565 58.6
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 2.6e-169 599.4 565 59.5
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 5.9e-169 598.2 564 59.4
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.6e-169 597.8 493 65.7
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.0e-168 597.4 564 59.2
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.0e-168 597.4 564 59.2
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 1.3e-168 597.0 565 59.3
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.7e-168 596.7 565 58.4
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.0e-168 595.1 551 60.3
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 5.5e-167 591.7 432 73.4
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 9.3e-167 590.9 553 59.9
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.2e-166 590.5 555 59.6
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.6e-166 590.1 555 61.3
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.1e-166 589.7 539 61.4
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 3.6e-166 589.0 565 58.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.6e-166 589.0 577 56.3
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 4.6e-166 588.6 562 58.0
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.3e-165 587.0 563 58.3
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 3.0e-165 585.9 567 58.4
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 5.1e-165 585.1 506 62.5
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 6.7e-165 584.7 564 57.8
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.3e-164 582.4 554 59.0
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.6e-163 580.1 565 57.9
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.7e-163 578.9 516 62.0
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.1e-162 577.4 559 56.2
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.4e-162 577.0 564 57.1
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.3e-162 575.1 558 58.1
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.4e-161 572.4 562 58.2
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 4.5e-161 572.0 559 58.1
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 2.2e-160 569.7 553 57.7
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 2.2e-160 569.7 553 57.5
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 2.2e-160 569.7 561 57.9
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 5.0e-160 568.5 556 56.1
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 6.5e-160 568.2 411 72.7
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.9e-159 566.6 553 56.8
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 3.2e-159 565.8 553 56.4
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 3.2e-159 565.8 553 57.9
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 5.5e-159 565.1 552 57.6
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 7.2e-159 564.7 550 58.4
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 9.4e-159 564.3 553 57.0
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.6e-158 562.0 486 61.1
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 6.1e-158 561.6 550 58.4
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-157 560.8 545 56.7
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.4e-157 560.5 564 56.6
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 6.7e-157 558.1 559 56.4
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 5.7e-156 555.1 552 56.5
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.7e-155 553.5 551 57.0
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.8e-154 550.1 441 64.6
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 3.4e-153 545.8 565 54.2
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 4.5e-153 545.4 548 56.2
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.7e-152 543.5 545 57.8
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.9e-152 542.7 466 62.2
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 2.9e-152 542.7 564 54.6
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 6.5e-152 541.6 555 55.1
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.1e-151 540.8 549 55.9
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 4.7e-150 535.4 564 54.4
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 3.3e-148 529.3 558 55.4
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 3.3e-148 529.3 566 52.3
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.4e-148 528.9 410 66.6
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 4.8e-147 525.4 558 55.0
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.6e-145 519.6 535 58.3
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 2.1e-142 510.0 531 55.4
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 5.7e-140 501.9 583 50.4
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 8.2e-139 498.0 519 55.3
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.2e-139 498.0 491 59.3
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.4e-138 497.3 551 54.1
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.7e-134 483.0 517 56.1
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.7e-131 473.8 400 62.2
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 4.5e-129 465.7 556 48.6
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.5e-124 450.7 383 61.1
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.1e-122 444.5 337 67.4
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.7e-120 437.2 552 47.8
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.3e-112 410.2 440 54.8
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 3.0e-112 409.8 519 45.7
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.9e-106 390.6 425 55.1
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 7.8e-97 358.6 441 42.2
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-96 357.8 286 65.0
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.6e-96 355.1 207 82.1
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.8e-93 347.4 307 67.1
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 4.4e-92 342.8 196 82.1
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.3e-78 298.1 298 58.7
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-74 283.9 255 63.9
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-72 278.5 154 85.1
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.3e-72 277.3 188 70.2
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.0e-72 276.9 356 46.9
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.3e-71 273.5 374 39.3
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 7.6e-60 235.7 212 65.1
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 4.9e-59 233.0 271 55.4
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.1e-50 205.3 178 64.6
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 3.9e-32 143.7 91 73.6
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.3e-31 140.6 91 72.5
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 9.7e-31 139.0 138 55.1
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 7.0e-29 132.9 248 41.9
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.7e-25 120.9 78 73.1
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 9.7e-23 112.5 114 51.8
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 7.0e-21 106.3 76 67.1
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 7.0e-21 106.3 69 71.0
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.7e-20 104.4 69 69.6
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.5e-18 97.8 179 31.3
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 5.7e-15 86.7 72 56.9
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 4.8e-14 83.6 50 76.0
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 8.3e-14 82.8 138 42.8
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.7e-12 77.8 126 43.7


User provided reference genes

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