Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 1.2e-183 646.4 311 100.0
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 2.9e-134 482.3 317 73.8
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 3.9e-131 471.9 317 71.9
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 2.9e-126 455.7 301 70.4
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.4e-125 453.4 301 70.8
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 8.7e-123 444.1 301 68.8
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 8.2e-121 437.6 322 65.2
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 3.1e-120 435.6 303 69.6
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 9.0e-120 434.1 315 65.7
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 8.4e-118 427.6 300 68.7
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 7.1e-117 424.5 274 70.4
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 7.1e-117 424.5 300 66.7
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.2e-116 423.7 300 66.7
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.1e-116 422.9 300 66.7
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.5e-116 422.2 300 66.7
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 4.6e-116 421.8 302 66.2
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 4.6e-116 421.8 302 66.2
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 7.9e-116 421.0 303 64.7
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.0e-115 420.6 300 66.3
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 1.3e-115 420.2 318 66.7
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.8e-115 419.9 300 66.0
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 1.8e-115 419.9 304 67.1
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.9e-115 418.7 300 66.0
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 5.1e-115 418.3 300 66.3
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.9e-114 416.4 312 63.8
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 4.3e-114 415.2 305 64.9
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 5.7e-114 414.8 300 65.7
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 9.7e-114 414.1 273 69.2
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 1.6e-113 413.3 302 65.2
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 1.6e-113 413.3 302 65.2
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 3.7e-113 412.1 303 65.3
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 4.8e-113 411.8 275 69.5
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 6.3e-113 411.4 314 64.6
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 6.3e-113 411.4 302 64.9
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 8.2e-113 411.0 305 64.3
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 8.2e-113 411.0 303 63.0
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 8.2e-113 411.0 301 62.8
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 1.8e-112 409.8 306 63.7
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 2.4e-112 409.5 303 63.7
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 9.0e-112 407.5 314 64.0
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 1.5e-111 406.8 303 63.7
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.5e-111 406.8 307 61.6
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.0e-111 406.4 279 67.4
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.6e-111 406.0 290 66.2
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 2.6e-111 406.0 307 61.6
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.7e-110 403.3 307 61.2
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.4e-109 400.2 273 68.5
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 1.6e-108 396.7 276 65.6
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 2.7e-108 396.0 275 66.5
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.8e-107 393.3 270 67.0
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 3.9e-107 392.1 293 62.1
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 6.7e-107 391.3 293 62.1
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 1.1e-106 390.6 302 60.9
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 3.3e-106 389.0 312 60.3
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 4.3e-106 388.7 303 59.7
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 4.3e-106 388.7 305 61.3
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 5.7e-106 388.3 323 58.5
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 7.4e-106 387.9 287 61.3
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 3.7e-105 385.6 304 59.5
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 4.8e-105 385.2 308 60.4
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.8e-104 383.3 272 65.1
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 5.3e-104 381.7 270 65.6
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 9.1e-104 380.9 276 63.0
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 2.9e-102 375.9 301 58.8
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 2.9e-102 375.9 303 60.4
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 2.5e-101 372.9 311 57.6
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 3.2e-101 372.5 338 56.2
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 2.1e-100 369.8 278 64.4
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 2.7e-100 369.4 324 55.9
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 4.7e-100 368.6 301 55.1
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 4.7e-100 368.6 273 61.5
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 6.1e-100 368.2 295 59.0
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 9.7e-98 360.9 285 62.1
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 6.3e-97 358.2 330 53.3
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 6.3e-97 358.2 324 55.6
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 1.1e-96 357.5 310 59.4
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 1.1e-96 357.5 304 58.2
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 1.8e-96 356.7 283 61.8
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 3.1e-96 355.9 303 56.4
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 1.3e-94 350.5 307 56.0
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 5.0e-94 348.6 262 63.0
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 1.0e-91 340.9 246 63.4
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 3.1e-88 329.3 268 58.2
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 3.1e-88 329.3 269 58.7
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 7.7e-87 324.7 301 54.2
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 5.5e-85 318.5 290 53.8
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 1.4e-83 313.9 240 63.3
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 1.8e-83 313.5 302 52.3
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 1.1e-80 304.3 340 46.8
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 4.1e-80 302.4 321 52.0
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 3.5e-79 299.3 229 60.3
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 1.7e-78 297.0 213 64.8
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.9e-77 293.5 290 51.4
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 2.5e-77 293.1 189 72.0
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 4.2e-77 292.4 268 53.4
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.4e-75 287.3 253 56.1
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 6.8e-75 285.0 275 52.4
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 8.8e-75 284.6 189 70.9
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 3.1e-72 276.2 277 50.5
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 1.2e-71 274.2 273 49.8
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 2.7e-71 273.1 189 66.1
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 6.1e-68 261.9 273 46.9
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 6.3e-65 251.9 176 63.6
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 2.9e-62 243.0 275 44.7
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 1.1e-61 241.1 309 42.7
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 1.9e-61 240.4 313 42.8
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.2e-60 237.7 189 62.4
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 2.1e-60 236.9 189 59.3
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 3.7e-57 226.1 283 42.0
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.0e-55 220.3 188 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 1.7e-54 217.2 250 42.8
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 2.3e-54 216.9 205 55.1
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 5.0e-54 215.7 285 40.4
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 3.6e-52 209.5 186 56.5
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 6.4e-49 198.7 125 72.8
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 1.6e-47 194.1 317 35.0
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 3.5e-47 193.0 309 34.6
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.7e-46 190.7 191 50.3
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 5.6e-45 185.7 275 37.8
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 2.1e-44 183.7 135 66.7
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 6.2e-44 182.2 275 36.4
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 8.9e-43 178.3 119 66.4
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 5.8e-42 175.6 275 37.5
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 3.7e-41 172.9 117 66.7
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 8.6e-38 161.8 106 67.0
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.6e-36 157.5 237 36.7
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 4.7e-36 156.0 118 61.0
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.1e-35 154.8 164 51.8
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 2.2e-33 147.1 118 56.8
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 2.4e-32 143.7 122 55.7
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 1.7e-30 137.5 112 59.8
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 1.5e-29 134.4 100 63.0
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 2.1e-28 130.6 118 50.8
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 8.4e-25 118.6 101 56.4
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 3.5e-23 113.2 118 44.9
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 4.8e-20 102.8 90 52.2
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.4e-19 101.3 63 76.2
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 1.8e-19 100.9 180 38.9
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 8.4e-17 92.0 73 61.6
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 9.3e-16 88.6 62 67.7
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.2e-15 88.2 61 62.3
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 5.6e-13 79.3 61 59.0
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 1.6e-12 77.8 56 50.0
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 1.6e-12 77.8 85 42.4
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 3.4e-10 70.1 128 35.2
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 1.6e-07 61.2 51 52.9


User provided reference genes

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