Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p060986 Quercus lobata HOM05D003337 ORTHO05D003808 4.0e-66 254.6 127 100.0
QL02p021300 Quercus lobata HOM05D003337 ORTHO05D003808 3.4e-25 118.6 63 85.7
TWI34G0528 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 8.7e-21 104.0 63 73.0
Cpa.g.sc217.15 Carica papaya HOM05D003337 ORTHO05D003808 1.5e-20 103.2 63 73.0
Haze_21497 Corylus avellana HOM05D003337 ORTHO05D003808 1.9e-20 102.8 63 73.0
Manes.16G123500 Manihot esculenta HOM05D003337 ORTHO05D003808 2.5e-20 102.4 63 73.0
TWI32G1054 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 3.3e-20 102.1 63 71.4
CiPaw.08G010200 Carya illinoinensis HOM05D003337 ORTHO05D003808 4.3e-20 101.7 63 73.0
ClCG05G016760 Citrullus lanatus HOM05D003337 ORTHO05D003808 4.3e-20 101.7 63 73.0
MELO3C003713.2 Cucumis melo HOM05D003337 ORTHO05D003808 4.3e-20 101.7 63 73.0
CsaV3_3G046270 Cucumis sativus L. HOM05D003337 ORTHO05D003808 4.3e-20 101.7 63 73.0
RcHm_v2.0_Chr6g0297611 Rosa chinensis HOM05D003337 ORTHO05D003808 4.3e-20 101.7 63 73.0
Atru.chr7.2457 Acer truncatum HOM05D003337 ORTHO05D003808 7.4e-20 100.9 63 71.4
Sed0015158 Sechium edule HOM05D003337 ORTHO05D003808 7.4e-20 100.9 63 71.4
TPR.G3117 Trifolium pratense HOM05D003337 ORTHO05D003808 7.4e-20 100.9 63 73.0
Medtr3g106700 Medicago truncatula HOM05D003337 ORTHO05D003808 9.7e-20 100.5 63 73.0
Sed0024031 Sechium edule HOM05D003337 ORTHO05D003808 9.7e-20 100.5 63 71.4
CANSAT25G2205 Cannabis sativa HOM05D003337 ORTHO05D003808 1.3e-19 100.1 63 71.4
Ciclev10007238m.g Citrus clementina HOM05D003337 ORTHO05D003808 1.3e-19 100.1 63 69.8
Lalb_Chr08g0244181 Lupinus albus HOM05D003337 ORTHO05D003808 1.3e-19 100.1 63 71.4
MD15G1127100 Malus domestica HOM05D003337 ORTHO05D003808 1.3e-19 100.1 63 71.4
FAN15G2120 Fragaria x ananassa HOM05D003337 ORTHO05D003808 1.6e-19 99.8 63 71.4
FAN20G0291 Fragaria x ananassa HOM05D003337 ORTHO05D003808 1.6e-19 99.8 63 71.4
FAN24G1139 Fragaria x ananassa HOM05D003337 ORTHO05D003808 1.6e-19 99.8 63 71.4
Lalb_Chr11g0063671 Lupinus albus HOM05D003337 ORTHO05D003808 1.6e-19 99.8 63 69.8
Lalb_Chr23g0268451 Lupinus albus HOM05D003337 ORTHO05D003808 1.6e-19 99.8 63 69.8
Thecc.09G022400 Theobroma cacao HOM05D003337 ORTHO05D003808 1.6e-19 99.8 63 71.4
COL.COLO4_18879 Corchorus olitorius HOM05D003337 ORTHO05D003808 2.2e-19 99.4 63 69.8
Duzib168G1956 Durio zibethinus HOM05D003337 ORTHO05D003808 2.2e-19 99.4 63 69.8
Eucgr.C01723 Eucalyptus grandis HOM05D003337 ORTHO05D003808 2.2e-19 99.4 61 75.4
FvH4_2g28850 Fragaria vesca HOM05D003337 ORTHO05D003808 2.2e-19 99.4 63 71.4
Phvul.009G091900 Phaseolus vulgaris HOM05D003337 ORTHO05D003808 2.2e-19 99.4 63 71.4
VMungo1309G0140 Vigna mungo HOM05D003337 ORTHO05D003808 2.2e-19 99.4 63 71.4
FAN27G2849 Fragaria x ananassa HOM05D003337 ORTHO05D003808 2.8e-19 99.0 63 71.4
MD08G1156500 Malus domestica HOM05D003337 ORTHO05D003808 3.7e-19 98.6 63 69.8
Glyma.04G065500 Glycine max HOM05D003337 ORTHO05D003808 1.1e-18 97.1 63 68.3
Glyma.06G066900 Glycine max HOM05D003337 ORTHO05D003808 1.1e-18 97.1 63 68.3
Potri.006G256400 Populus trichocarpa HOM05D003337 ORTHO05D003808 1.1e-18 97.1 60 71.7
Potri.018G025600 Populus trichocarpa HOM05D003337 ORTHO05D003808 1.1e-18 97.1 60 71.7
Sabra18G0028200 Salix brachista HOM05D003337 ORTHO05D003808 1.1e-18 97.1 60 71.7
CiPaw.07G224800 Carya illinoinensis HOM05D003337 ORTHO05D003808 1.4e-18 96.7 63 69.8
Duzib187G1394 Durio zibethinus HOM05D003337 ORTHO05D003808 1.4e-18 96.7 63 66.7
Lj1g0009523 Lotus japonicus HOM05D003337 ORTHO05D003808 1.8e-18 96.3 63 68.3
PGR031G1540 Punica granatum HOM05D003337 ORTHO05D003808 2.4e-18 95.9 60 73.3
GSVIVG01035878001 Vitis vinifera HOM05D003337 ORTHO05D003808 3.1e-18 95.5 63 68.3
arahy.Tifrunner.gnm1.ann1.C340QI Arachis hypogaea HOM05D003337 ORTHO05D003808 4.1e-18 95.1 64 68.8
arahy.Tifrunner.gnm1.ann1.EV8XFE Arachis hypogaea HOM05D003337 ORTHO05D003808 4.1e-18 95.1 64 68.8
Psat5g029560 Pisum sativum HOM05D003337 ORTHO05D003808 4.1e-18 95.1 63 66.7
TAR625G0257 Trochodendron aralioides HOM05D003337 ORTHO05D003808 4.1e-18 95.1 57 77.2
Gohir.A05G055800 Gossypium hirsutum HOM05D003337 ORTHO05D003808 6.9e-18 94.4 60 68.3
Gohir.A05G055900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 6.9e-18 94.4 60 68.3
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 6.9e-18 94.4 60 68.3
Gorai.009G059000 Gossypium raimondii HOM05D003337 ORTHO05D003808 6.9e-18 94.4 60 68.3
Gorai.009G059100 Gossypium raimondii HOM05D003337 ORTHO05D003808 6.9e-18 94.4 60 68.3
Hma1.2p1_0243F.1_g101010 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 6.9e-18 94.4 63 69.8
Nitab4.5_0004664g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 6.9e-18 94.4 57 73.7
Gohir.D05G058000 Gossypium hirsutum HOM05D003337 ORTHO05D003808 9.0e-18 94.0 60 68.3
Nitab4.5_0002042g0010 Nicotiana tabacum HOM05D003337 ORTHO05D003808 9.0e-18 94.0 57 73.7
Sabra06G0200600 Salix brachista HOM05D003337 ORTHO05D003808 1.5e-17 93.2 60 68.3
SHI18538 Sapria himalayana HOM05D003337 ORTHO05D003808 2.0e-17 92.8 60 68.3
TAR636G2033 Trochodendron aralioides HOM05D003337 ORTHO05D003808 2.6e-17 92.4 57 73.7
Nn2g12124 Nelumbo nucifera HOM05D003337 ORTHO05D003808 4.5e-17 91.7 57 73.7
Nn8g39563 Nelumbo nucifera HOM05D003337 ORTHO05D003808 4.5e-17 91.7 57 73.7
Dinv18205 Davidia involucrata HOM05D003337 ORTHO05D003808 7.6e-17 90.9 63 68.3
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 1.0e-16 90.5 60 63.3
Lj7C724G9 Lonicera japonica HOM05D003337 ORTHO05D003808 1.0e-16 90.5 60 70.0
Actinidia14594 Actinidia chinensis HOM05D003337 ORTHO05D003808 1.3e-16 90.1 63 68.3
EL10Ac2g04195 Beta vulgaris HOM05D003337 ORTHO05D003808 1.3e-16 90.1 60 70.0
CSS0014408 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.3e-16 90.1 63 68.3
CSS0019364 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.3e-16 90.1 63 68.3
Dinv05003 Davidia involucrata HOM05D003337 ORTHO05D003808 1.3e-16 90.1 63 65.1
Nitab4.5_0000165g0080 Nicotiana tabacum HOM05D003337 ORTHO05D003808 1.3e-16 90.1 60 66.7
Nitab4.5_0001294g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 1.3e-16 90.1 60 66.7
CAN.G130.8 Capsicum annuum HOM05D003337 ORTHO05D003808 1.7e-16 89.7 60 68.3
Sc09g0010250 Simmondsia chinensis HOM05D003337 ORTHO05D003808 1.7e-16 89.7 60 65.0
Solyc06g017970.4 Solanum lycopersicum HOM05D003337 ORTHO05D003808 1.7e-16 89.7 60 68.3
Sopen06g008090 Solanum pennellii HOM05D003337 ORTHO05D003808 1.7e-16 89.7 60 68.3
CBR_g20432 Chara braunii HOM05D003337 ORTHO05D003808 2.9e-16 89.0 60 70.0
Cc08_g00460 Coffea canephora HOM05D003337 ORTHO05D003808 2.9e-16 89.0 55 67.3
Peaxi162Scf00136g02012 Petunia axillaris HOM05D003337 ORTHO05D003808 3.8e-16 88.6 57 66.7
HPP92_015261 Vanilla planifolia HOM05D003337 ORTHO05D003808 3.8e-16 88.6 97 49.5
Ah.16g104580 Amaranthus hybridus HOM05D003337 ORTHO05D003808 5.0e-16 88.2 60 68.3
CSS0040129 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 6.5e-16 87.8 65 66.2
MBI14_g37827_MAGBIO Magnolia biondii HOM05D003337 ORTHO05D003808 6.5e-16 87.8 57 70.2
TAR383G0965 Trochodendron aralioides HOM05D003337 ORTHO05D003808 6.5e-16 87.8 57 68.4
AT2G25320 Arabidopsis thaliana HOM05D003337 ORTHO05D003808 1.1e-15 87.0 60 65.0
Thhalv10000009m.g Eutrema salsugineum HOM05D003337 ORTHO05D003808 1.4e-15 86.7 94 46.8
Rhsim02G0202500 Rhododendron simsii HOM05D003337 ORTHO05D003808 1.9e-15 86.3 65 61.5
Aa31sc102G10 Aethionema arabicum HOM05D003337 ORTHO05D003808 2.5e-15 85.9 57 66.7
AL4G16700 Arabidopsis lyrata HOM05D003337 ORTHO05D003808 2.5e-15 85.9 57 66.7
Carub.0004s0499 Capsella rubella HOM05D003337 ORTHO05D003808 2.5e-15 85.9 57 66.7
SEGI_27941 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 2.5e-15 85.9 60 68.3
Mapoly0008s0250 Marchantia polymorpha HOM05D003337 ORTHO05D003808 3.2e-15 85.5 60 66.7
BcaB08g35177 Brassica carinata HOM05D003337 ORTHO05D003808 4.2e-15 85.1 57 64.9
CDE02G1979 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 4.2e-15 85.1 57 70.2
CDE05G2189 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 4.2e-15 85.1 57 70.2
Lsat_1_v5_gn_5_30121 Lactuca sativa HOM05D003337 ORTHO05D003808 4.2e-15 85.1 61 65.6
HanXRQChr05g0134851 Helianthus annuus HOM05D003337 ORTHO05D003808 5.5e-15 84.7 61 63.9
BcaC07g40870 Brassica carinata HOM05D003337 ORTHO05D003808 9.4e-15 84.0 57 63.2
A09p55690 Brassica napus HOM05D003337 ORTHO05D003808 9.4e-15 84.0 57 63.2
C08p38690 Brassica napus HOM05D003337 ORTHO05D003808 9.4e-15 84.0 57 63.2
BolC8t51439H Brassica oleracea HOM05D003337 ORTHO05D003808 9.4e-15 84.0 57 63.2
BraA09t40970Z Brassica rapa HOM05D003337 ORTHO05D003808 9.4e-15 84.0 57 63.2
Sp4g04460 Schrenkiella parvula HOM05D003337 ORTHO05D003808 9.4e-15 84.0 94 45.7
ATR0739G172 Amborella trichopoda HOM05D003337 ORTHO05D003808 1.6e-14 83.2 60 65.0
BcaC02g08354 Brassica carinata HOM05D003337 ORTHO05D003808 1.6e-14 83.2 76 50.0
Hund25887 Selenicereus undatus HOM05D003337 ORTHO05D003808 1.6e-14 83.2 60 60.0
Pp3c2_25330 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.1e-14 82.8 60 65.0
Pp3c2_25350 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.1e-14 82.8 60 65.0
Pp3c2_25380 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.1e-14 82.8 60 65.0
Aqoxy7G02409 Aquilegia oxysepala HOM05D003337 ORTHO05D003808 2.7e-14 82.4 60 70.0
MSTRG.26016 Avicennia marina HOM05D003337 ORTHO05D003808 4.6e-14 81.6 61 60.7
Oeu053108.1 Olea europaea HOM05D003337 ORTHO05D003808 4.6e-14 81.6 61 62.3
BcaB06g28056 Brassica carinata HOM05D003337 ORTHO05D003808 6.1e-14 81.3 88 45.5
C04p55320 Brassica napus HOM05D003337 ORTHO05D003808 6.1e-14 81.3 75 50.7
BolC4t27068H Brassica oleracea HOM05D003337 ORTHO05D003808 6.1e-14 81.3 75 50.7
vmacro11183 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 6.1e-14 81.3 65 61.5
PSO017G4016 Papaver somniferum HOM05D003337 ORTHO05D003808 7.9e-14 80.9 57 70.2
PSO170G2416 Papaver somniferum HOM05D003337 ORTHO05D003808 7.9e-14 80.9 57 70.2
Oeu012290.1 Olea europaea HOM05D003337 ORTHO05D003808 1.0e-13 80.5 61 60.7
SalBow4G0163 Salvia bowleyana HOM05D003337 ORTHO05D003808 1.4e-13 80.1 61 59.0
AT2G25330 Arabidopsis thaliana HOM05D003337 ORTHO05D003808 1.8e-13 79.7 57 59.6
Pp3c1_12560 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.3e-13 79.3 60 60.0
SMO144G0040 Selaginella moellendorffii HOM05D003337 ORTHO05D003808 2.3e-13 79.3 60 61.7
A04p19680 Brassica napus HOM05D003337 ORTHO05D003808 3.9e-13 78.6 79 46.8
BraA04t17558Z Brassica rapa HOM05D003337 ORTHO05D003808 3.9e-13 78.6 79 46.8
ECA246G2127 Erigeron canadensis HOM05D003337 ORTHO05D003808 3.9e-13 78.6 61 60.7
Migut.A00028 Erythranthe guttata HOM05D003337 ORTHO05D003808 3.9e-13 78.6 61 59.0
ECA234G4693 Erigeron canadensis HOM05D003337 ORTHO05D003808 1.5e-12 76.6 78 50.0
ECA247G3242 Erigeron canadensis HOM05D003337 ORTHO05D003808 1.5e-12 76.6 61 59.0
SGA_v2.0_scaffold64G21955 Striga asiatica HOM05D003337 ORTHO05D003808 1.5e-12 76.6 61 57.4
unitig_748.g8275 Utricularia gibba HOM05D003337 ORTHO05D003808 1.3e-11 73.6 53 64.2
SEGI_27956 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 1.7e-11 73.2 60 56.7
AUR62012417 Chenopodium quinoa HOM05D003337 ORTHO05D003808 1.4e-10 70.1 45 66.7
AUR62031541 Chenopodium quinoa HOM05D003337 ORTHO05D003808 1.4e-10 70.1 45 66.7
Dinv41471 Davidia involucrata HOM05D003337 ORTHO05D003808 1.2e-09 67.0 93 44.1
Oeu060140.1 Olea europaea HOM05D003337 ORTHO05D003808 2.9e-08 62.4 61 55.7
CSS0034669 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.1e-07 60.5 60 50.0
CSS0042062 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.1e-07 60.5 83 44.6
CSS0046302 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.1e-07 60.5 60 50.0
GSVIVG01015601001 Vitis vinifera HOM05D003337 ORTHO05D003808 3.2e-07 58.9 57 50.9
Zm00001eb184600 Zea mays HOM05D003337 ORTHO05D003808 5.5e-07 58.2 63 50.8


User provided reference genes

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