Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p059433 Quercus lobata HOM05D001384 ORTHO05D001215 8.5e-27 123.2 78 100.0
QL04p058637 Quercus lobata HOM05D001384 ORTHO05D001215 8.0e-17 90.1 76 80.3
Haze_15620 Corylus avellana HOM05D001384 ORTHO05D001215 7.5e-15 83.6 74 78.4
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 2.2e-14 82.0 76 68.4
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 8.3e-14 80.1 72 68.1
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 2.4e-13 78.6 65 67.7
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.2e-13 78.2 72 66.7
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.2e-13 78.2 72 66.7
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 7.0e-13 77.0 72 68.1
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 1.2e-12 76.3 72 66.7
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-12 76.3 65 84.6
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.2e-12 76.3 72 66.7
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.6e-12 75.9 65 72.3
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.6e-12 75.9 65 72.3
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 4.6e-12 74.3 70 62.9
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.6e-12 74.3 65 70.8
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 4.6e-12 74.3 64 78.1
Manes.05G026100 Manihot esculenta HOM05D001384 ORTHO05D001215 7.8e-12 73.6 78 69.2
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.3e-11 72.8 65 67.7
THA.LOC104817336 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 1.7e-11 72.4 64 59.4
Gohir.A07G139600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.3e-11 72.0 72 61.1
Gohir.D07G144700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.3e-11 72.0 72 61.1
Gorai.001G156700 Gossypium raimondii HOM05D001384 ORTHO05D001215 2.3e-11 72.0 72 61.1
FAN01G1051 Fragaria x ananassa HOM05D001384 ORTHO05D001215 3.9e-11 71.2 85 64.7
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 8.6e-11 70.1 65 58.5
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 8.6e-11 70.1 81 64.2
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.1e-10 69.7 81 61.7
GSVIVG01027049001 Vitis vinifera HOM05D001384 ORTHO05D001215 1.1e-10 69.7 36 94.4
arahy.Tifrunner.gnm1.ann1.1BHK1H Arachis hypogaea HOM05D001384 ORTHO05D001215 1.5e-10 69.3 70 55.7
FAN06G3780 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.5e-10 69.3 78 64.1
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 1.5e-10 69.3 65 58.5
arahy.Tifrunner.gnm1.ann1.JZQU6N Arachis hypogaea HOM05D001384 ORTHO05D001215 1.9e-10 68.9 76 51.3
arahy.Tifrunner.gnm1.ann1.XBFI6K Arachis hypogaea HOM05D001384 ORTHO05D001215 1.9e-10 68.9 76 51.3
CsaV3_3G008420 Cucumis sativus L. HOM05D001384 ORTHO05D001215 1.9e-10 68.9 71 57.7
Dinv32554 Davidia involucrata HOM05D001384 ORTHO05D001215 1.9e-10 68.9 65 67.7
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 1.9e-10 68.9 65 56.9
Actinidia20196 Actinidia chinensis HOM05D001384 ORTHO05D001215 3.3e-10 68.2 68 70.6
Aqoxy5G04117 Aquilegia oxysepala HOM05D001384 ORTHO05D001215 3.3e-10 68.2 60 76.7
FAN06G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 3.3e-10 68.2 79 65.8
ClCG05G001090 Citrullus lanatus HOM05D001384 ORTHO05D001215 4.3e-10 67.8 73 64.4
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 4.3e-10 67.8 65 61.5
FAN10G1694 Fragaria x ananassa HOM05D001384 ORTHO05D001215 4.3e-10 67.8 83 65.1
FAN10G3769 Fragaria x ananassa HOM05D001384 ORTHO05D001215 4.3e-10 67.8 87 62.1
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 4.3e-10 67.8 66 57.6
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 4.3e-10 67.8 59 71.2
vmacro22519 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 5.6e-10 67.4 65 55.4
arahy.Tifrunner.gnm1.ann1.246EX0 Arachis hypogaea HOM05D001384 ORTHO05D001215 7.3e-10 67.0 76 56.6
CANSAT56G0949 Cannabis sativa HOM05D001384 ORTHO05D001215 7.3e-10 67.0 72 70.8
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 7.3e-10 67.0 65 56.9
Actinidia02805 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.2e-09 66.2 35 88.6
arahy.Tifrunner.gnm1.ann1.57RBBI Arachis hypogaea HOM05D001384 ORTHO05D001215 1.2e-09 66.2 70 55.7
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 1.2e-09 66.2 72 61.1
Glyma.03G255700 Glycine max HOM05D001384 ORTHO05D001215 1.6e-09 65.9 60 56.7
RcHm_v2.0_Chr1g0358781 Rosa chinensis HOM05D001384 ORTHO05D001215 1.6e-09 65.9 85 58.8
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 1.6e-09 65.9 65 55.4
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 2.1e-09 65.5 63 61.9
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 2.1e-09 65.5 65 55.4
BcaB01g03227 Brassica carinata HOM05D001384 ORTHO05D001215 2.8e-09 65.1 37 89.2
CSS0003232 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 2.8e-09 65.1 70 64.3
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 2.8e-09 65.1 63 58.7
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 3.6e-09 64.7 70 51.4
BcaC01g05077 Brassica carinata HOM05D001384 ORTHO05D001215 3.6e-09 64.7 61 60.7
FAN03G0436 Fragaria x ananassa HOM05D001384 ORTHO05D001215 3.6e-09 64.7 82 62.2
Nitab4.5_0000305g0110 Nicotiana tabacum HOM05D001384 ORTHO05D001215 3.6e-09 64.7 67 58.2
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 3.6e-09 64.7 60 73.3
Sabra02G0144100 Salix brachista HOM05D001384 ORTHO05D001215 4.7e-09 64.3 78 62.8
PGSC0003DMG400000207 Solanum tuberosum HOM05D001384 ORTHO05D001215 4.7e-09 64.3 62 58.1
C04p31180 Brassica napus HOM05D001384 ORTHO05D001215 8.0e-09 63.5 57 57.9
BolC4t24669H Brassica oleracea HOM05D001384 ORTHO05D001215 8.0e-09 63.5 57 57.9
Lalb_Chr04g0261751 Lupinus albus HOM05D001384 ORTHO05D001215 8.0e-09 63.5 36 86.1
BcaC01g05082 Brassica carinata HOM05D001384 ORTHO05D001215 1.0e-08 63.2 70 51.4
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 1.0e-08 63.2 58 65.5
Zm00001eb237880 Zea mays HOM05D001384 ORTHO05D001215 1.0e-08 63.2 61 73.8
Zm00001eb359480 Zea mays HOM05D001384 ORTHO05D001215 1.0e-08 63.2 33 90.9
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 1.4e-08 62.8 67 53.7
MELO3C006062.2 Cucumis melo HOM05D001384 ORTHO05D001215 1.4e-08 62.8 62 71.0
Nitab4.5_0009232g0020 Nicotiana tabacum HOM05D001384 ORTHO05D001215 1.4e-08 62.8 67 56.7
Solyc01g095515.1 Solanum lycopersicum HOM05D001384 ORTHO05D001215 1.4e-08 62.8 61 57.4
Sopen01g039270 Solanum pennellii HOM05D001384 ORTHO05D001215 1.4e-08 62.8 61 57.4
AL4G45630 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 1.8e-08 62.4 72 54.2
AT2G46330 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 1.8e-08 62.4 72 54.2
BcaB01g03224 Brassica carinata HOM05D001384 ORTHO05D001215 1.8e-08 62.4 69 55.1
BcaC02g12698 Brassica carinata HOM05D001384 ORTHO05D001215 1.8e-08 62.4 69 55.1
C03p30500 Brassica napus HOM05D001384 ORTHO05D001215 1.8e-08 62.4 61 59.0
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 1.8e-08 62.4 33 90.9
Lj1g0002747 Lotus japonicus HOM05D001384 ORTHO05D001215 1.8e-08 62.4 64 56.2
Peaxi162Scf01012g00121 Petunia axillaris HOM05D001384 ORTHO05D001215 1.8e-08 62.4 60 55.0
Prupe.2G183500 Prunus persica HOM05D001384 ORTHO05D001215 1.8e-08 62.4 93 45.2
Carub.0004s2903 Capsella rubella HOM05D001384 ORTHO05D001215 2.3e-08 62.0 61 57.4
Ciclev10023364m.g Citrus clementina HOM05D001384 ORTHO05D001215 2.3e-08 62.0 66 63.6
Thhalv10001752m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 2.3e-08 62.0 61 57.4
Aa31LG10G15620 Aethionema arabicum HOM05D001384 ORTHO05D001215 3.1e-08 61.6 37 83.8
A03p25570 Brassica napus HOM05D001384 ORTHO05D001215 3.1e-08 61.6 61 59.0
BraA03t11773Z Brassica rapa HOM05D001384 ORTHO05D001215 3.1e-08 61.6 61 59.0
Dinv37556 Davidia involucrata HOM05D001384 ORTHO05D001215 3.1e-08 61.6 57 64.9
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 3.1e-08 61.6 69 63.8
Rhsim01G0169300 Rhododendron simsii HOM05D001384 ORTHO05D001215 3.1e-08 61.6 35 85.7
TWI59G0487 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 3.1e-08 61.6 68 64.7
BcaC02g10241 Brassica carinata HOM05D001384 ORTHO05D001215 4.0e-08 61.2 57 56.1
A04p00990 Brassica napus HOM05D001384 ORTHO05D001215 4.0e-08 61.2 34 82.4
BraA04t15816Z Brassica rapa HOM05D001384 ORTHO05D001215 4.0e-08 61.2 34 82.4
CAN.G986.43 Capsicum annuum HOM05D001384 ORTHO05D001215 4.0e-08 61.2 60 58.3
MD07G1144900 Malus domestica HOM05D001384 ORTHO05D001215 4.0e-08 61.2 95 55.8
Os05g0217000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 4.0e-08 61.2 33 84.8
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 5.2e-08 60.8 60 60.0
HanXRQChr04g0121001 Helianthus annuus HOM05D001384 ORTHO05D001215 5.2e-08 60.8 66 53.0
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 5.2e-08 60.8 65 58.5
Rhsim07G0006800 Rhododendron simsii HOM05D001384 ORTHO05D001215 5.2e-08 60.8 66 56.1
Zm00001eb350580 Zea mays HOM05D001384 ORTHO05D001215 5.2e-08 60.8 33 84.8
Atru.chr5.621 Acer truncatum HOM05D001384 ORTHO05D001215 6.8e-08 60.5 74 55.4
BcaB02g08150 Brassica carinata HOM05D001384 ORTHO05D001215 6.8e-08 60.5 33 84.8
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 6.8e-08 60.5 59 59.3
FvH4_7g30990 Fragaria vesca HOM05D001384 ORTHO05D001215 6.8e-08 60.5 54 66.7
FAN06G1205 Fragaria x ananassa HOM05D001384 ORTHO05D001215 6.8e-08 60.5 56 64.3
Sp4g28370 Schrenkiella parvula HOM05D001384 ORTHO05D001215 6.8e-08 60.5 68 54.4
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 6.8e-08 60.5 73 54.8
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 6.8e-08 60.5 70 52.9
BcaB01g03229 Brassica carinata HOM05D001384 ORTHO05D001215 8.9e-08 60.1 71 52.1
CDE02G0411 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 8.9e-08 60.1 59 55.9
Sp5g01770 Schrenkiella parvula HOM05D001384 ORTHO05D001215 8.9e-08 60.1 62 58.1
THA.LOC104802055 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 8.9e-08 60.1 36 80.6
CSS0021424 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 1.2e-07 59.7 68 61.8
TWI15G0052 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 1.2e-07 59.7 59 74.6
Phvul.006G110400 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 1.5e-07 59.3 52 61.5
BcaC02g12816 Brassica carinata HOM05D001384 ORTHO05D001215 2.0e-07 58.9 68 54.4
A05p01460 Brassica napus HOM05D001384 ORTHO05D001215 2.0e-07 58.9 68 54.4
C04p01650 Brassica napus HOM05D001384 ORTHO05D001215 2.0e-07 58.9 68 54.4
BolC4t21817H Brassica oleracea HOM05D001384 ORTHO05D001215 2.0e-07 58.9 68 54.4
BraA05t19143Z Brassica rapa HOM05D001384 ORTHO05D001215 2.0e-07 58.9 68 54.4
Lj4g0006841 Lotus japonicus HOM05D001384 ORTHO05D001215 2.0e-07 58.9 73 61.6
MD01G1076000 Malus domestica HOM05D001384 ORTHO05D001215 2.0e-07 58.9 95 54.7
Os01g0657000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 2.0e-07 58.9 59 55.9
Prupe.2G306800 Prunus persica HOM05D001384 ORTHO05D001215 2.0e-07 58.9 63 57.1
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 2.0e-07 58.9 75 52.0
FAN06G2829 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.6e-07 58.5 56 62.5
CDE02G4026 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 3.4e-07 58.2 65 55.4
CDE09G1367 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 3.4e-07 58.2 60 53.3
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 4.4e-07 57.8 59 55.9
Phvul.002G296000 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 4.4e-07 57.8 70 45.7
QL02p057492 Quercus lobata HOM05D001384 ORTHO05D001215 4.4e-07 57.8 32 90.6
Lsat_1_v5_gn_6_11901 Lactuca sativa HOM05D001384 ORTHO05D001215 5.8e-07 57.4 60 56.7
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 5.8e-07 57.4 58 56.9
SEGI_03889 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 5.8e-07 57.4 33 81.8
SEGI_03997 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 5.8e-07 57.4 33 81.8
AL5G44040 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 7.5e-07 57.0 63 49.2
Manes.01G249100 Manihot esculenta HOM05D001384 ORTHO05D001215 7.5e-07 57.0 78 61.5
Medtr8g099245 Medicago truncatula HOM05D001384 ORTHO05D001215 7.5e-07 57.0 65 52.3
Os02g0264800 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 7.5e-07 57.0 63 63.5
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 7.5e-07 57.0 61 55.7
SalBow1G1836 Salvia bowleyana HOM05D001384 ORTHO05D001215 7.5e-07 57.0 63 57.1
SalBow1G7997 Salvia bowleyana HOM05D001384 ORTHO05D001215 7.5e-07 57.0 63 57.1
AL6G35460 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 9.8e-07 56.6 62 71.0
CDE08G0321 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 9.8e-07 56.6 65 53.8
Os06g0505700 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 9.8e-07 56.6 32 84.4
arahy.Tifrunner.gnm1.ann1.Y9NP63 Arachis hypogaea HOM05D001384 ORTHO05D001215 1.3e-06 56.2 65 63.1
Duzib084G1120 Durio zibethinus HOM05D001384 ORTHO05D001215 1.3e-06 56.2 54 59.3
arahy.Tifrunner.gnm1.ann1.T3QZI5 Arachis hypogaea HOM05D001384 ORTHO05D001215 1.7e-06 55.8 65 63.1
ClCG07G014860 Citrullus lanatus HOM05D001384 ORTHO05D001215 1.7e-06 55.8 61 55.7
FAN10G2526 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.7e-06 55.8 58 70.7
FAN10G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.7e-06 55.8 58 70.7
Manes.14G018800 Manihot esculenta HOM05D001384 ORTHO05D001215 1.7e-06 55.8 69 50.7
Mapoly0024s0017 Marchantia polymorpha HOM05D001384 ORTHO05D001215 1.7e-06 55.8 73 61.6
Sed0009789 Sechium edule HOM05D001384 ORTHO05D001215 1.7e-06 55.8 69 47.8
TWI14G0223 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 1.7e-06 55.8 54 75.9
Migut.E01230 Erythranthe guttata HOM05D001384 ORTHO05D001215 2.2e-06 55.5 57 56.1
SMO143G0078 Selaginella moellendorffii HOM05D001384 ORTHO05D001215 2.2e-06 55.5 33 81.8
Thecc.03G292300 Theobroma cacao HOM05D001384 ORTHO05D001215 2.2e-06 55.5 65 52.3
Duzib068G0580 Durio zibethinus HOM05D001384 ORTHO05D001215 2.9e-06 55.1 60 56.7
Zm00001eb203920 Zea mays HOM05D001384 ORTHO05D001215 2.9e-06 55.1 31 83.9
AagrBONN_evm.TU.Sc2ySwM_117.409 Anthoceros agrestis HOM05D001384 ORTHO05D001215 3.7e-06 54.7 63 52.4
ECA236G1259 Erigeron canadensis HOM05D001384 ORTHO05D001215 3.7e-06 54.7 61 59.0
Oeu030571.1 Olea europaea HOM05D001384 ORTHO05D001215 3.7e-06 54.7 57 57.9
Potri.001G094700 Populus trichocarpa HOM05D001384 ORTHO05D001215 3.7e-06 54.7 32 84.4
RcHm_v2.0_Chr1g0380071 Rosa chinensis HOM05D001384 ORTHO05D001215 3.7e-06 54.7 59 57.6
unitig_62.g23800 Utricularia gibba HOM05D001384 ORTHO05D001215 3.7e-06 54.7 37 70.3
CiPaw.05G258000 Carya illinoinensis HOM05D001384 ORTHO05D001215 4.9e-06 54.3 64 68.8
Ca_17497_v3 Cicer arietinum L. HOM05D001384 ORTHO05D001215 4.9e-06 54.3 65 52.3
TWI81G0992 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 4.9e-06 54.3 65 49.2
EL10Ac3g05350 Beta vulgaris HOM05D001384 ORTHO05D001215 6.4e-06 53.9 53 56.6
MELO3C032818.2 Cucumis melo HOM05D001384 ORTHO05D001215 6.4e-06 53.9 55 56.4
Sc13g0009580 Simmondsia chinensis HOM05D001384 ORTHO05D001215 6.4e-06 53.9 53 75.5
CDE03G0448 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 8.3e-06 53.5 62 46.8
Gohir.A12G234600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 8.3e-06 53.5 54 57.4
Gorai.008G252400 Gossypium raimondii HOM05D001384 ORTHO05D001215 8.3e-06 53.5 54 57.4
Psat7g027760 Pisum sativum HOM05D001384 ORTHO05D001215 8.3e-06 53.5 64 51.6


User provided reference genes

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