Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 1.4e-300 1035.4 502 100.0
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 1.2e-243 846.3 514 80.2
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 2.1e-243 845.5 514 80.5
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 1.3e-232 809.7 515 75.3
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 1.1e-231 806.6 501 77.4
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 7.0e-231 803.9 468 80.8
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 9.1e-231 803.5 541 74.3
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 1.6e-230 802.7 498 78.1
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 2.0e-230 802.4 514 75.3
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 3.5e-230 801.6 518 74.7
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 1.3e-229 799.7 517 74.5
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 1.7e-229 799.3 503 76.1
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 3.8e-229 798.1 455 80.7
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 3.8e-229 798.1 516 75.6
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 1.5e-228 796.2 461 80.9
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 7.2e-228 793.9 526 74.3
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 9.5e-228 793.5 511 75.0
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.7e-227 791.2 480 80.2
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 3.4e-225 785.0 518 74.7
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 3.4e-225 785.0 499 75.4
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 7.5e-225 783.9 507 75.0
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 7.5e-225 783.9 517 73.9
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 1.7e-224 782.7 470 79.1
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 2.2e-224 782.3 452 81.9
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 8.3e-224 780.4 507 74.6
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 2.4e-223 778.9 519 74.8
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 4.1e-223 778.1 485 76.3
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 5.4e-223 777.7 517 73.7
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 5.4e-223 777.7 506 74.3
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 5.4e-223 777.7 530 72.8
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 1.6e-222 776.2 486 75.1
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 3.5e-222 775.0 502 74.7
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 7.8e-222 773.9 517 72.9
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 2.3e-221 772.3 514 74.5
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 2.3e-221 772.3 518 73.0
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 3.8e-221 771.5 462 78.4
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 5.0e-221 771.2 521 71.6
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 2.5e-220 768.8 507 73.8
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 7.3e-220 767.3 482 76.1
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 2.1e-219 765.8 482 76.8
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.8e-219 765.4 536 70.5
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 4.7e-219 764.6 518 73.0
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 1.8e-218 762.7 500 74.6
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 3.0e-218 761.9 520 71.2
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.2e-217 760.0 492 73.6
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 1.5e-217 759.6 500 73.6
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.6e-217 758.8 506 72.9
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 2.6e-217 758.8 493 73.6
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 3.4e-217 758.4 443 79.2
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 5.7e-217 757.7 453 79.0
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 5.7e-217 757.7 520 71.3
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 9.8e-217 756.9 498 72.9
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 2.9e-216 755.4 497 72.8
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 1.1e-215 753.4 521 70.6
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 1.4e-215 753.1 521 69.9
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 3.5e-214 748.4 490 72.7
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 3.5e-214 748.4 523 70.0
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 4.6e-214 748.0 527 69.4
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 4.6e-214 748.0 468 77.1
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 5.0e-213 744.6 465 76.6
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 1.1e-212 743.4 466 74.7
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 1.5e-212 743.0 454 75.1
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 2.5e-212 742.3 519 70.9
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.3e-212 741.5 498 74.1
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 4.3e-212 741.5 466 74.7
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 5.6e-212 741.1 466 74.5
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 7.3e-212 740.7 501 71.7
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 9.5e-212 740.3 466 74.2
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 1.6e-211 739.6 496 71.0
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.6e-211 739.6 455 76.9
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 4.7e-211 738.0 519 70.1
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 6.2e-211 737.6 495 71.5
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 6.2e-211 737.6 473 73.4
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 8.0e-211 737.3 490 73.1
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 2.3e-210 735.7 495 70.3
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 5.2e-210 734.6 526 68.4
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 8.9e-210 733.8 503 69.8
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 1.2e-209 733.4 519 69.7
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 7.5e-209 730.7 455 74.7
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 6.4e-208 727.6 535 69.0
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 6.4e-208 727.6 485 71.1
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 2.4e-207 725.7 469 73.6
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 1.3e-205 719.9 455 73.6
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.1e-204 716.8 510 68.6
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 1.5e-204 716.5 461 71.8
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 2.5e-204 715.7 451 73.6
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 3.3e-204 715.3 502 69.7
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 2.0e-201 706.1 451 74.1
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 1.4e-199 699.9 456 74.1
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 3.9e-197 691.8 453 70.9
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 4.0e-194 681.8 456 71.1
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 1.3e-189 666.8 478 69.0
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 6.2e-179 631.3 482 65.1
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 2.4e-178 629.4 454 68.1
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 1.3e-176 623.6 449 63.9
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 3.8e-176 622.1 488 63.3
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 1.9e-172 609.8 413 72.9
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 7.4e-172 607.8 483 60.5
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 2.1e-171 606.3 473 62.6
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 1.2e-169 600.5 446 62.8
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 2.0e-169 599.7 427 69.8
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 3.0e-165 585.9 365 75.9
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 1.5e-164 583.6 497 59.8
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 8.2e-139 498.0 303 77.9
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 2.1e-134 483.4 477 54.7
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.8e-130 470.3 321 72.9
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 1.3e-123 447.6 464 48.7
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 8.6e-112 408.3 475 46.5
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 1.2e-108 397.9 303 65.3
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 1.1e-98 364.8 463 44.3
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 9.5e-79 298.5 444 38.1
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 8.4e-43 179.1 99 79.8
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 1.3e-40 171.8 226 40.7
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 4.1e-37 160.2 99 74.7
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 4.1e-37 160.2 99 74.7
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 4.1e-37 160.2 99 74.7
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 4.1e-37 160.2 99 74.7
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 5.5e-26 123.2 280 31.4
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 7.0e-21 106.3 78 64.1
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 1.1e-15 89.0 57 71.9
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 4.2e-10 70.5 43 83.7
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 2.7e-09 67.8 107 42.1
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 3.0e-08 64.3 41 78.0
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 3.0e-08 64.3 37 75.7


User provided reference genes

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