Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 0.0e+00 1328.9 688 100.0
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 2.0e-204 716.5 696 59.6
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 8.8e-200 701.0 660 62.7
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 1.4e-165 587.4 695 53.7
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 1.5e-159 567.4 691 51.4
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.4e-157 560.8 683 50.7
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.6e-156 557.4 683 50.5
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 9.5e-154 548.1 701 49.2
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 6.1e-153 545.4 701 48.8
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 2.6e-151 540.0 693 48.2
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 6.0e-140 502.3 682 46.9
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 5.6e-138 495.7 690 46.2
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.2e-137 494.6 703 46.7
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 6.4e-134 482.3 700 45.1
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 3.5e-132 476.5 670 45.2
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.3e-131 473.8 693 45.7
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 6.6e-131 472.2 695 45.2
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 8.6e-131 471.9 708 47.0
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 4.3e-130 469.5 694 45.0
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.6e-129 466.5 693 45.3
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 3.6e-129 466.5 697 45.2
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.5e-127 461.1 688 44.3
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.5e-127 461.1 695 44.2
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.7e-126 457.6 694 45.5
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 8.4e-126 455.3 695 44.6
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 8.4e-126 455.3 704 44.5
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 8.4e-126 455.3 697 44.6
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.4e-125 454.5 689 45.0
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 1.4e-125 454.5 690 43.9
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.1e-125 452.2 710 45.2
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 9.2e-125 451.8 690 43.6
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 2.1e-124 450.7 693 44.4
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 6.0e-124 449.1 710 45.1
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.0e-124 449.1 710 45.1
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.0e-123 448.4 708 44.9
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.0e-123 446.8 697 42.9
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.0e-123 446.8 700 44.0
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 5.1e-123 446.0 699 42.9
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.2e-121 441.4 688 42.9
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 2.8e-121 440.3 699 43.3
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 4.7e-121 439.5 695 44.6
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 6.2e-121 439.1 709 42.6
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 8.1e-121 438.7 701 43.9
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 5.3e-120 436.0 695 44.3
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 2.0e-119 434.1 698 43.7
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 6.4e-118 429.1 699 43.3
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.1e-117 428.3 658 43.6
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 4.2e-117 426.4 713 41.5
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 9.3e-117 425.2 688 42.6
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 3.5e-116 423.3 756 41.3
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 7.8e-116 422.2 725 40.3
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 3.9e-115 419.9 687 42.5
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 6.6e-115 419.1 707 41.9
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.9e-114 417.5 712 42.0
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.3e-113 414.8 700 42.3
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 2.4e-112 410.6 702 40.6
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.8e-110 403.3 700 42.6
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.4e-110 402.1 708 42.4
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 1.4e-109 401.4 739 39.5
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 2.8e-105 387.1 699 40.6
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 3.7e-105 386.7 696 40.1
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.8e-104 384.4 662 40.8
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 9.0e-104 382.1 716 39.8
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 5.8e-103 379.4 701 39.9
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 3.3e-98 363.6 656 40.5
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.0e-95 354.4 655 39.2
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.0e-94 352.1 693 39.4
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.7e-94 351.3 695 37.6
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-93 348.2 509 49.1
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 4.2e-93 346.7 688 38.8
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.5e-93 346.3 596 41.1
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.9e-90 337.8 633 38.7
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 4.3e-90 336.7 626 37.7
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 2.8e-89 334.0 628 38.2
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 8.2e-89 332.4 631 38.2
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 2.2e-86 324.3 615 39.3
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 3.2e-85 320.5 731 35.6
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 9.4e-85 318.9 698 37.4
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 5.1e-83 313.2 695 35.5
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 5.1e-83 313.2 457 46.8
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.1e-82 312.0 616 37.5
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 4.3e-82 310.1 696 35.8
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.7e-81 308.1 690 35.2
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 2.2e-81 307.8 696 37.1
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.8e-80 304.7 686 36.0
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.8e-80 304.7 697 36.4
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 3.1e-80 303.9 698 35.8
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 4.1e-80 303.5 686 36.2
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.1e-80 303.5 655 35.7
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 5.3e-80 303.1 686 36.0
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 2.6e-79 300.8 686 36.0
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 5.9e-79 299.7 686 36.0
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 5.0e-78 296.6 695 35.3
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.4e-77 295.0 451 45.2
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 7.9e-76 289.3 687 35.7
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.0e-75 287.3 424 48.8
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 1.7e-73 281.6 711 34.2
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 3.7e-73 280.4 697 34.7
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 4.8e-73 280.0 726 33.5
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 6.3e-73 279.6 697 35.0
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 1.4e-72 278.5 698 35.0
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 1.4e-72 278.5 698 35.0
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 1.4e-72 278.5 698 35.0
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.1e-72 276.9 711 35.3
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 4.5e-71 273.5 461 41.0
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.9e-70 270.8 699 33.3
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 1.1e-69 268.9 676 33.3
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 2.1e-68 264.6 422 41.2
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.7e-68 264.2 617 36.5
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 2.2e-65 254.6 683 31.5
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 2.6e-63 247.7 714 32.1
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 4.7e-60 236.9 698 32.8
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 8.0e-60 236.1 452 40.5
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 5.7e-58 229.9 325 44.9
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.1e-56 225.7 703 29.3
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.6e-55 221.9 718 28.7
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 2.0e-55 221.5 704 30.1
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 3.8e-54 217.2 369 41.5
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.0e-54 216.9 632 32.4
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-53 215.7 369 41.2
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.5e-53 213.4 369 40.4
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 6.8e-51 206.5 361 41.8
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 3.5e-47 194.1 435 36.8
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.5e-47 194.1 704 30.1
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.5e-45 188.7 715 28.5
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.6e-44 185.3 387 38.2
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.1e-40 172.6 130 64.6
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 2.4e-40 171.4 385 34.3
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.0e-39 168.3 610 29.2
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 5.0e-38 163.7 389 33.7
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.2e-36 159.1 594 30.0
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 6.1e-36 156.8 331 41.1
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 7.5e-34 149.8 184 47.3
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.9e-33 147.9 110 65.5
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 1.2e-31 142.5 128 58.6
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 5.0e-30 137.1 429 29.4
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 1.1e-27 129.4 427 31.1
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.1e-27 127.9 119 58.8
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 8.9e-27 126.3 94 64.9
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.9e-21 108.6 144 47.2
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 8.1e-20 103.2 88 53.4
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 3.7e-17 94.4 196 32.1
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.4e-16 92.4 99 52.5
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 9.2e-16 89.7 94 45.7
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.6e-15 89.0 118 47.5
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 5.6e-13 80.5 65 66.2
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 6.0e-07 60.5 390 20.5


User provided reference genes

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