Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 1.6e-141 506.1 263 100.0
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.2e-112 410.2 266 82.0
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 1.0e-111 407.1 266 82.0
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 4.6e-109 398.3 267 77.5
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 3.0e-108 395.6 267 75.7
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 3.9e-108 395.2 265 76.6
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 3.7e-106 388.7 265 77.0
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 1.8e-105 386.3 264 76.5
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 5.3e-105 384.8 268 76.5
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 5.3e-105 384.8 267 77.2
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 7.7e-104 380.9 267 74.9
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 2.9e-103 379.0 263 77.2
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 8.5e-103 377.5 268 75.4
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 9.4e-102 374.0 269 75.1
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 9.4e-102 374.0 266 74.1
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.2e-101 373.6 265 73.2
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 1.6e-101 373.2 264 74.2
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 2.7e-101 372.5 270 72.6
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 3.6e-101 372.1 271 72.3
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 4.6e-101 371.7 272 73.5
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 2.3e-100 369.4 266 76.3
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 5.1e-100 368.2 265 74.0
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 6.7e-100 367.9 269 73.2
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 6.7e-100 367.9 268 75.0
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 1.5e-99 366.7 264 72.3
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.5e-99 366.7 269 72.9
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 3.3e-99 365.5 265 73.2
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 4.4e-99 365.2 263 72.2
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 4.4e-99 365.2 269 74.0
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 5.7e-99 364.8 263 72.2
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 7.4e-99 364.4 266 75.6
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 9.7e-99 364.0 263 74.9
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.3e-98 363.6 263 71.9
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 2.8e-98 362.5 263 71.9
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 2.8e-98 362.5 266 70.3
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 3.7e-98 362.1 267 70.8
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 8.2e-98 360.9 270 72.2
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.2e-98 360.9 261 73.2
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.2e-98 360.9 261 73.2
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.4e-97 360.1 261 72.8
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.8e-97 359.8 260 71.9
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.4e-97 359.4 261 72.8
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.4e-97 359.4 261 72.8
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 3.1e-97 359.0 261 72.4
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 4.1e-97 358.6 267 70.0
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 5.3e-97 358.2 266 69.9
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 5.3e-97 358.2 261 72.0
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 5.3e-97 358.2 261 72.4
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 6.9e-97 357.8 271 69.4
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.2e-96 357.1 261 71.3
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.0e-96 356.3 269 69.9
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 2.6e-96 355.9 266 69.9
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 2.6e-96 355.9 264 72.3
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 3.4e-96 355.5 266 69.9
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 3.4e-96 355.5 269 69.1
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 3.4e-96 355.5 265 71.3
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 4.5e-96 355.1 263 70.0
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 7.7e-96 354.4 266 69.5
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 7.7e-96 354.4 266 69.5
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 7.7e-96 354.4 264 70.5
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 7.7e-96 354.4 264 69.3
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 1.7e-95 353.2 261 70.9
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 6.5e-95 351.3 265 69.8
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 8.5e-95 350.9 266 69.2
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 8.5e-95 350.9 224 79.5
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 2.5e-94 349.4 265 69.4
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 3.2e-94 349.0 265 69.4
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 4.2e-94 348.6 268 69.0
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 5.5e-94 348.2 267 70.8
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 7.2e-94 347.8 266 68.8
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 7.2e-94 347.8 266 68.8
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 1.2e-93 347.1 265 69.1
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 2.1e-93 346.3 242 72.3
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 2.7e-93 345.9 263 68.1
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 3.6e-93 345.5 270 68.5
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 4.7e-93 345.1 263 68.8
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.4e-92 343.6 264 68.2
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.4e-92 343.6 261 69.7
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 2.3e-92 342.8 266 68.4
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.1e-91 340.5 265 67.5
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 5.7e-91 338.2 271 67.2
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 1.1e-89 334.0 252 70.2
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.1e-89 334.0 264 67.8
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 3.1e-89 332.4 252 69.8
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.6e-88 330.1 266 66.9
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 3.5e-88 328.9 307 59.9
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 4.5e-88 328.6 247 69.2
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 4.5e-88 328.6 247 69.2
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 5.9e-88 328.2 274 65.7
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 5.9e-88 328.2 267 65.5
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.7e-87 326.6 267 65.5
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 2.5e-86 322.8 263 65.8
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 2.7e-85 319.3 264 64.8
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.7e-85 319.3 214 74.8
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 4.7e-85 318.5 261 65.9
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.7e-85 318.5 265 65.3
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.0e-84 315.8 256 65.6
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 2.8e-82 309.3 183 84.2
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 9.1e-81 304.3 234 65.4
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 2.0e-80 303.1 236 67.4
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 6.5e-79 298.1 191 75.9
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 6.8e-76 288.1 214 66.4
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 8.3e-74 281.2 227 62.6
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.0e-72 276.6 263 59.3
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 3.2e-70 269.2 226 64.6
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.2e-70 269.2 195 72.3
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 5.5e-70 268.5 199 70.4
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 5.5e-70 268.5 199 70.4
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 3.0e-68 262.7 242 58.7
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 5.7e-67 258.5 237 57.0
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 7.8e-64 248.1 261 50.2
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.3e-63 247.3 214 55.1
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.1e-62 244.2 228 51.3
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.5e-62 243.8 177 63.8
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 6.4e-58 228.4 176 71.6
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 3.3e-54 216.1 141 72.3
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 2.0e-51 206.8 133 79.7
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 8.1e-45 184.9 154 53.9
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.7e-39 167.2 114 76.3
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 6.6e-39 165.2 264 42.8
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 6.6e-39 165.2 264 42.8
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 1.1e-38 164.5 165 45.5
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.9e-38 163.7 264 42.4
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 5.6e-38 162.2 115 71.3
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 9.9e-35 151.4 159 57.9
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 3.1e-28 129.8 88 75.0
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.8e-27 125.6 76 84.2
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.1e-25 121.3 173 37.6
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.1e-20 104.8 70 72.9
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 7.6e-19 98.6 79 64.6
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 5.4e-17 92.4 168 31.5
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.9e-14 84.0 66 65.2
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 6.2e-13 79.0 60 63.3
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 2.2e-10 70.5 39 82.1
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 9.3e-09 65.1 102 39.2
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.3e-07 61.2 87 51.7
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 1.8e-07 60.8 51 62.7
Cfa027004 Carpinus fangiana HOM05D001556 ORTHO05D001505 4.3e-06 56.2 139 26.6


User provided reference genes

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