Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 2252.6 1130 100.0
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 2022.7 1132 89.6
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1978.4 1132 87.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1964.9 1132 87.1
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1954.5 1131 86.2
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1949.5 1131 85.6
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1949.5 1127 86.1
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1928.3 1131 84.8
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1926.4 1132 85.2
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1926.0 1130 85.2
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1924.8 1131 84.2
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1924.4 1131 84.8
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1914.8 1131 84.3
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1912.9 1132 84.3
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1906.0 1132 84.1
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1905.2 1133 84.3
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1897.9 1136 83.9
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1895.6 1132 83.7
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1894.4 1130 82.7
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1892.1 1130 83.0
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1890.2 1131 82.8
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1889.8 1133 83.1
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1889.4 1104 85.8
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1889.4 1147 83.1
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1885.5 1131 83.0
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1885.2 1131 83.0
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1884.8 1134 82.5
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1884.8 1130 82.8
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1884.8 1131 83.4
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1882.1 1129 83.9
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1878.6 1193 79.8
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1877.1 1132 82.6
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1875.9 1147 82.7
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1871.3 1136 81.9
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1870.9 1135 82.2
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1869.7 1134 82.2
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1868.2 1133 82.3
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1867.8 1131 81.1
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1866.3 1136 81.7
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1861.7 1137 82.0
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1859.3 1136 81.7
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1856.6 1128 82.7
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1854.3 1158 80.0
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1846.2 1133 81.8
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1843.2 1132 81.4
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1839.3 1133 81.9
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1836.2 1130 80.4
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1834.7 1129 80.2
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1827.0 1086 83.9
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1823.9 1130 80.5
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1823.5 1132 82.5
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1822.0 1131 79.7
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1821.6 1135 79.3
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1820.8 1132 79.9
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1817.7 1131 81.1
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1808.9 1171 78.3
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1803.5 1132 80.2
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1802.7 1197 76.1
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1799.6 1138 78.5
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1798.9 1205 76.3
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1796.6 1136 78.4
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1795.0 1080 82.3
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1793.1 1049 85.8
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1789.2 1126 79.5
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1787.3 1133 78.0
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1783.8 1131 78.3
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1768.1 1088 81.0
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1765.4 1257 73.6
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1755.0 1125 77.4
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1743.4 1127 77.6
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1739.2 1125 77.6
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1730.7 1159 77.6
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1721.4 1136 76.2
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1717.2 1326 68.8
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1714.1 1132 75.9
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1714.1 1132 75.9
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1690.6 1132 75.1
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1687.5 1132 75.0
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1673.7 1128 74.9
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1672.5 1128 74.8
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1669.4 1128 74.6
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1660.2 1128 74.7
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1659.0 1128 74.6
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1658.3 1133 74.0
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1650.6 1170 73.8
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1629.0 1146 71.4
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1621.7 959 83.9
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1597.0 1170 70.6
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1568.1 1138 70.0
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1558.9 1126 71.2
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1554.3 1168 69.1
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1550.4 1138 69.0
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1536.9 1138 68.5
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1493.4 1115 69.6
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1464.9 851 85.3
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1463.0 847 85.5
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1452.6 879 81.3
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1452.2 988 75.5
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1371.7 870 78.2
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1323.9 1134 62.5
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1283.5 792 81.3
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1242.3 691 89.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1236.9 827 74.2
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 0.0e+00 1130.9 1539 45.2
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1118.6 1144 51.2
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.1e-308 1063.5 1130 51.2
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.4e-295 1020.0 1165 47.6
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 8.8e-282 974.2 1159 45.6
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.2e-277 959.5 680 69.9
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 5.7e-273 944.9 681 72.7
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 8.0e-267 924.5 536 87.3
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 3.7e-264 915.6 1390 38.6
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 8.9e-258 894.4 593 77.7
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 5.4e-255 885.2 746 61.5
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 4.8e-211 739.2 451 79.2
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 9.3e-207 724.9 625 61.8
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.1e-202 711.4 430 82.8
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.0e-185 654.1 590 55.4
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 5.9e-185 652.5 429 71.6
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.2e-161 575.1 451 65.9
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 1.4e-141 508.4 310 80.6
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.5e-135 487.6 375 70.1
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 2.7e-121 441.0 324 74.1
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 2.9e-107 394.4 1100 29.7
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 1.9e-87 328.6 780 31.3
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 3.4e-84 317.8 1458 23.0
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 9.3e-82 309.7 288 56.9
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.8e-77 295.4 198 73.2
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.1e-77 294.7 229 70.3
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 5.7e-71 273.9 198 77.3
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 7.4e-71 273.5 201 66.2
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 3.4e-68 264.6 294 52.7
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 2.4e-61 241.9 206 59.7
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 6.9e-61 240.4 212 60.8
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 9.1e-61 240.0 186 65.1
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 6.7e-56 223.8 315 38.4
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-52 213.0 602 32.2
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 2.1e-49 202.2 211 58.3
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 5.2e-48 197.6 189 55.6
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 9.7e-47 193.4 211 55.0
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.2e-46 192.2 249 44.6
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 3.2e-42 178.3 338 40.5
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.1e-37 163.3 198 50.5
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.2e-36 159.8 724 23.6
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.2e-31 143.3 87 80.5
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 2.6e-31 142.1 85 82.4
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.7e-27 129.4 85 80.0
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.1e-26 126.7 85 65.9
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.3e-26 124.8 138 53.6
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.1e-25 122.5 173 43.9
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 2.0e-23 115.9 65 83.1
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 4.6e-20 104.8 161 39.8
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.3e-19 102.4 74 70.3
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.6e-17 96.3 64 73.4
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.4e-16 93.2 60 75.0
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.0e-15 89.4 67 61.2
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 2.0e-15 89.4 67 67.2
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 9.8e-15 87.0 95 52.6
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.1e-13 83.6 123 43.1
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 1.9e-13 82.8 45 82.2
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.1e-13 81.6 80 57.5
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 5.4e-13 81.3 53 71.7
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 3.0e-11 75.5 56 60.7
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 1.2e-09 70.1 49 67.3
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.2e-09 70.1 48 70.8
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.2e-08 64.7 43 67.4
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 8.9e-08 63.9 86 46.5
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 2.9e-06 58.9 43 60.5
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 3.7e-06 58.5 41 68.3
arahy.Tifrunner.gnm1.ann1.RG0L3L Arachis hypogaea HOM05D004297 ORTHO05D085181 4.9e-06 58.2 70 41.4


User provided reference genes

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