Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 2.1e-103 379.8 320 100.0
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.7e-60 237.3 325 67.7
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 9.5e-56 221.5 327 48.9
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 1.2e-45 188.0 238 45.4
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 3.5e-42 176.4 234 44.4
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 1.9e-40 170.6 335 52.2
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 7.3e-40 168.7 341 39.3
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 2.8e-39 166.8 247 42.5
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 1.7e-36 157.5 327 56.9
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 5.4e-35 152.5 338 39.9
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 9.2e-35 151.8 228 43.4
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 9.2e-35 151.8 338 38.8
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 4.6e-34 149.4 247 40.9
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 1.0e-33 148.3 242 41.7
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 2.3e-33 147.1 232 47.0
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 3.0e-33 146.7 112 72.3
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 1.2e-31 141.4 238 50.8
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 1.6e-31 141.0 238 43.3
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 6.2e-31 139.0 241 40.2
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 1.8e-30 137.5 238 51.3
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 1.2e-29 134.8 234 39.7
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 2.9e-28 130.2 235 39.1
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.4e-28 129.0 237 39.2
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.4e-28 129.0 235 38.7
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 6.4e-28 129.0 235 47.7
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 8.3e-28 128.6 237 38.4
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 1.4e-27 127.9 235 37.0
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 3.2e-27 126.7 328 37.5
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.2e-27 126.7 237 38.8
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 4.1e-27 126.3 237 37.1
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.8e-26 122.1 237 37.6
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 3.0e-25 120.2 246 38.2
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 1.9e-24 117.5 330 35.8
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 9.5e-24 115.2 243 33.3
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 1.2e-23 114.8 243 33.7
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 1.6e-23 114.4 340 39.4
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 1.4e-22 111.3 337 44.5
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.4e-22 111.3 241 35.3
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 1.4e-22 111.3 249 33.3
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 1.4e-22 111.3 235 36.2
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 4.0e-22 109.8 238 33.2
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 4.0e-22 109.8 248 36.3
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 4.0e-22 109.8 326 37.4
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 6.8e-22 109.0 242 35.5
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 6.8e-22 109.0 235 34.0
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 1.2e-21 108.2 191 39.3
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 1.5e-21 107.8 237 39.7
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 2.6e-21 107.1 236 35.2
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 3.4e-21 106.7 337 46.0
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 4.4e-21 106.3 234 35.0
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 5.8e-21 105.9 183 39.3
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.6e-21 105.5 241 34.9
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 9.9e-21 105.1 233 42.1
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 1.7e-20 104.4 332 44.3
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 2.2e-20 104.0 133 52.6
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.2e-20 104.0 231 34.6
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 6.4e-20 102.4 242 31.4
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.1e-19 101.7 232 34.5
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 1.4e-19 101.3 242 31.8
FAN10G3360 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.4e-19 99.4 165 36.4
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 5.4e-19 99.4 256 30.5
FAN10G1634 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.6e-18 96.3 165 35.8
FAN06G3127 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.8e-18 95.5 165 36.4
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 7.8e-18 95.5 236 40.3
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 7.8e-18 95.5 242 47.9
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 1.3e-17 94.7 252 33.7
FvH4_7g14880 Fragaria vesca HOM05D006343 ORTHO05D005694 2.3e-17 94.0 169 35.5
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 5.1e-17 92.8 257 29.6
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 6.6e-17 92.4 245 31.0
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 6.6e-17 92.4 244 33.2
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 6.6e-17 92.4 264 30.3
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 8.7e-17 92.0 248 35.1
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 1.1e-16 91.7 100 58.0
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.1e-16 91.7 176 39.2
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.9e-16 90.9 350 43.4
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.6e-16 89.4 279 30.5
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 7.3e-16 89.0 242 31.4
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 7.3e-16 89.0 242 33.5
Aqoxy7G00256 Aquilegia oxysepala HOM05D006343 ORTHO05D005694 1.2e-15 88.2 263 39.2
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.6e-15 87.8 236 33.1
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 4.7e-15 86.3 238 32.4
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.8e-14 84.3 121 49.6
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 1.8e-14 84.3 250 36.4
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 3.1e-14 83.6 257 29.2
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 4.0e-14 83.2 237 30.4
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 6.9e-14 82.4 241 29.5
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 1.2e-13 81.6 264 27.7
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 1.2e-13 81.6 254 29.5
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 1.2e-13 81.6 241 31.5
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 3.4e-13 80.1 242 31.4
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 5.8e-13 79.3 245 40.4
CDE02G1832 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 1.3e-12 78.2 243 28.4
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.3e-12 78.2 104 45.2
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 1.3e-12 78.2 115 41.7
Gorai.004G159200 Gossypium raimondii HOM05D006343 ORTHO05D005694 3.8e-12 76.6 104 44.2
Oeu035728.1 Olea europaea HOM05D006343 ORTHO05D005694 3.8e-12 76.6 224 29.5
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 4.9e-12 76.3 229 31.4
Migut.D00457 Erythranthe guttata HOM05D006343 ORTHO05D005694 1.4e-11 74.7 103 59.2
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 1.4e-11 74.7 246 40.2
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 3.2e-11 73.6 136 39.7
CDE06G1281 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 9.3e-11 72.0 101 38.6
FAN03G2349 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-10 71.6 75 53.3
Gohir.A08G131933 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.6e-10 71.2 104 45.2
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 4.6e-10 69.7 280 25.0
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 5.1e-09 66.2 242 30.6
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 6.6e-09 65.9 255 27.8
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 8.7e-09 65.5 241 29.0
ECA233G1044 Erigeron canadensis HOM05D006343 ORTHO05D005694 1.5e-08 64.7 209 24.9
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 3.3e-08 63.5 265 27.9
HPP92_025480 Vanilla planifolia HOM05D049984 ORTHO05D020951 7.3e-08 62.4 141 33.3
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 9.6e-08 62.0 100 38.0
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 9.6e-08 62.0 100 38.0
FAN06G3406 Fragaria x ananassa HOM05D006343 ORTHO05D005694 9.6e-08 62.0 98 38.8
TPR.G17916 Trifolium pratense HOM05D006343 ORTHO05D005694 9.6e-08 62.0 80 46.2
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.6e-07 61.2 242 29.8
Medtr8g028835 Medicago truncatula HOM05D006343 ORTHO05D005694 2.8e-07 60.5 78 48.7
PSO478G0137 Papaver somniferum HOM05D020029 ORTHO05D005694 3.6e-07 60.1 234 29.9
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 6.2e-07 59.3 107 37.4
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 8.1e-07 58.9 223 25.6
C09p00270 Brassica napus HOM05D012121 ORTHO05D005694 1.8e-06 57.8 102 36.3
arahy.Tifrunner.gnm1.ann1.C4511I Arachis hypogaea HOM05D051984 ORTHO05D005694 2.4e-06 57.4 112 38.4
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 3.1e-06 57.0 256 27.0
BraA09t35701Z Brassica rapa HOM05D012121 ORTHO05D005694 3.1e-06 57.0 100 37.0
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 3.1e-06 57.0 270 25.6
FAN03G0040 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.1e-06 57.0 53 41.5
arahy.Tifrunner.gnm1.ann1.ZG4E8S Arachis hypogaea HOM05D051984 ORTHO05D005694 5.3e-06 56.2 115 37.4
Zm00001eb222450 Zea mays HOM05D024295 ORTHO05D020951 5.3e-06 56.2 157 29.9
PSO782G1147 Papaver somniferum HOM05D020029 ORTHO05D005694 9.0e-06 55.5 231 26.0
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 9.0e-06 55.5 242 27.7


User provided reference genes

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