Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 0.0e+00 1667.5 827 100.0
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 0.0e+00 1348.2 824 79.2
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 0.0e+00 1328.9 814 79.7
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 0.0e+00 1328.2 818 79.3
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 0.0e+00 1120.1 809 68.0
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 0.0e+00 1115.5 835 66.8
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 0.0e+00 1114.8 827 66.4
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 0.0e+00 1114.8 826 66.7
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 0.0e+00 1108.6 828 66.4
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1105.1 840 65.6
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 0.0e+00 1100.5 787 68.0
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 0.0e+00 1100.5 825 66.1
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1099.3 824 66.6
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 0.0e+00 1098.2 834 65.5
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 0.0e+00 1094.7 865 64.0
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1090.9 824 65.9
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 0.0e+00 1081.2 824 65.8
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 0.0e+00 1077.8 823 65.9
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 0.0e+00 1076.6 823 65.0
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 0.0e+00 1075.8 820 65.9
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 0.0e+00 1075.8 820 64.9
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.1e-311 1072.8 839 63.8
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 4.0e-311 1071.2 840 64.0
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.1e-310 1069.7 823 64.6
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 2.5e-310 1068.5 829 64.1
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 3.3e-310 1068.1 817 64.5
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 4.3e-310 1067.8 840 63.3
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 4.0e-308 1061.2 769 67.6
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 5.2e-308 1060.8 783 68.2
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 6.8e-308 1060.4 812 64.5
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 8.9e-308 1060.1 825 64.4
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.4e-305 1052.7 825 64.2
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.9e-305 1052.4 798 63.9
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.3e-303 1046.2 739 69.8
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.3e-303 1046.2 802 64.5
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 2.3e-303 1045.4 828 62.8
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 3.9e-303 1044.6 831 62.6
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 3.9e-303 1044.6 842 62.7
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 6.6e-303 1043.9 833 62.8
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.5e-302 1042.7 835 62.5
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.6e-301 1039.3 837 61.8
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 3.6e-301 1038.1 814 63.1
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 6.2e-301 1037.3 784 63.6
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.1e-300 1036.6 835 62.5
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.1e-300 1036.6 835 62.6
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.2e-298 1028.9 878 60.0
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 8.4e-298 1026.9 833 63.0
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 2.4e-297 1025.4 826 62.8
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.6e-296 1021.1 782 65.0
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 5.1e-295 1017.7 817 62.4
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 5.6e-294 1014.2 838 61.2
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.3e-294 1013.8 840 61.5
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.1e-293 1012.3 764 65.2
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 2.9e-290 1001.9 838 61.0
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.4e-290 1000.3 833 61.1
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.4e-289 999.6 819 61.3
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 2.4e-289 998.8 831 60.3
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 2.3e-287 992.3 837 60.5
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 8.1e-285 983.8 835 60.4
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 9.0e-284 980.3 740 65.9
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 1.5e-283 979.5 717 67.5
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.7e-282 976.1 799 61.3
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 6.4e-282 974.2 770 63.6
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 7.1e-281 970.7 815 60.5
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 6.0e-280 967.6 790 60.6
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 1.0e-279 966.8 829 59.3
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 3.7e-277 958.4 825 59.8
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 5.3e-276 954.5 815 60.5
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 6.9e-276 954.1 806 59.2
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.4e-275 951.8 681 69.2
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 7.6e-275 950.7 838 58.6
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 4.9e-274 948.0 817 59.2
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 8.4e-274 947.2 810 57.4
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 5.5e-273 944.5 752 61.7
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 6.0e-272 941.0 826 57.0
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 6.0e-272 941.0 802 58.2
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.1e-270 936.8 733 63.4
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 7.4e-270 934.1 831 58.4
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 3.7e-269 931.8 802 59.9
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 2.4e-268 929.1 818 59.3
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 6.9e-268 927.5 816 58.6
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 4.5e-267 924.9 820 57.9
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 5.9e-267 924.5 722 63.0
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 5.9e-267 924.5 820 58.2
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.0e-266 923.7 820 58.7
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.3e-266 923.3 765 59.6
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 6.5e-266 921.0 818 58.1
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 5.5e-265 917.9 820 58.2
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.2e-264 916.8 686 65.6
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.1e-260 903.7 774 58.4
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.4e-260 903.3 816 56.4
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 4.1e-260 901.7 770 58.1
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 1.2e-259 900.2 820 57.0
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 3.4e-259 898.7 821 55.5
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 7.7e-259 897.5 819 56.7
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 1.3e-258 896.7 820 56.7
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 1.3e-258 896.7 820 56.7
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.3e-253 880.2 797 57.3
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 2.2e-253 879.4 808 55.4
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.2e-251 873.6 823 55.9
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.9e-249 866.3 784 55.5
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 4.2e-249 865.1 844 54.4
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 7.2e-249 864.4 819 55.6
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.6e-248 863.2 836 54.8
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 3.9e-247 858.6 784 55.4
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 3.0e-239 832.4 686 59.8
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 9.7e-238 827.4 765 56.9
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 7.5e-230 801.2 847 49.8
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.9e-226 789.3 654 60.6
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.5e-225 786.9 917 47.5
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.9e-225 786.6 849 48.5
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 3.2e-225 785.8 609 63.1
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 9.5e-217 757.7 667 56.5
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 9.5e-217 757.7 827 48.5
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.7e-213 746.9 861 48.3
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 5.0e-210 735.3 785 49.3
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.3e-209 732.3 525 66.7
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.8e-207 726.9 837 49.0
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 6.2e-200 701.8 832 46.6
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 8.1e-192 674.9 762 45.5
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 2.6e-190 669.8 709 50.5
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.3e-185 651.7 727 49.2
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.3e-178 630.2 722 47.9
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 9.6e-177 624.8 685 48.3
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.8e-173 612.8 445 67.6
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.0e-149 532.7 432 61.3
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.9e-148 530.8 529 51.8
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 6.3e-144 515.8 386 66.1
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 7.2e-140 502.3 337 73.0
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 9.1e-135 485.3 339 71.1
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.6e-131 473.4 713 38.8
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 7.5e-113 412.5 365 55.9
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 5.5e-108 396.4 622 38.7
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 4.5e-102 376.7 316 59.2
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 8.0e-99 365.9 793 31.1
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 4.9e-96 356.7 354 49.2
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.0e-93 349.0 898 29.2
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 6.0e-86 323.2 406 43.6
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.9e-85 320.5 291 58.8
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.0e-85 320.1 455 41.1
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 9.2e-79 299.3 515 33.2
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 5.2e-74 283.5 288 49.7
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.1e-58 231.1 200 59.0
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 1.6e-54 218.8 176 65.3
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.1e-52 212.6 173 65.9
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.0e-32 146.4 141 54.6
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.8e-26 125.6 127 42.5
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 1.1e-23 116.3 115 51.3
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.1e-21 107.5 109 51.4
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.2e-19 100.1 126 41.3
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 4.1e-18 97.8 87 63.2
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 2.9e-16 91.7 88 52.3
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.1e-12 79.7 63 52.4
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 6.3e-11 73.9 73 52.1
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 3.1e-10 71.6 47 70.2
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.9e-09 67.4 60 50.0
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 2.2e-08 65.5 36 75.0
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 8.0e-06 57.0 203 26.6


User provided reference genes

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