Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p053896 Quercus lobata HOM05D000574 ORTHO05D337306 5.5e-75 284.3 149 100.0
Haze_17231 Corylus avellana HOM05D000574 ORTHO05D002645 7.1e-30 134.4 199 45.7
Cfa001313 Carpinus fangiana HOM05D000574 ORTHO05D002645 3.9e-28 128.6 199 44.2
CiPaw.01G299500 Carya illinoinensis HOM05D000574 ORTHO05D002645 1.8e-25 119.8 190 42.1
TAR623G0900 Trochodendron aralioides HOM05D000574 ORTHO05D002645 1.6e-21 106.7 184 40.2
MD01G1153400 Malus domestica HOM05D000574 ORTHO05D002645 7.8e-21 104.4 194 39.7
Dinv10618 Davidia involucrata HOM05D000574 ORTHO05D002645 4.3e-19 98.6 201 37.3
Sabra08G0050700 Salix brachista HOM05D000574 ORTHO05D002645 4.3e-19 98.6 187 36.9
Dinv17999 Davidia involucrata HOM05D000574 ORTHO05D002645 5.6e-19 98.2 197 37.1
Prupe.2G250700 Prunus persica HOM05D000574 ORTHO05D002645 7.3e-19 97.8 192 36.5
MD07G1222400 Malus domestica HOM05D000574 ORTHO05D002645 2.1e-18 96.3 183 36.6
TAR633G0375 Trochodendron aralioides HOM05D000574 ORTHO05D002645 6.2e-18 94.7 179 39.1
Dinv03104 Davidia involucrata HOM05D000574 ORTHO05D002645 1.4e-17 93.6 179 39.1
Potri.008G069100 Populus trichocarpa HOM05D000574 ORTHO05D002645 1.8e-17 93.2 187 37.4
Cpa.g.sc19.167 Carica papaya HOM05D000574 ORTHO05D002645 3.1e-17 92.4 191 35.6
FAN10G3304 Fragaria x ananassa HOM05D000574 ORTHO05D002645 5.3e-17 91.7 191 35.1
Nn2g10851 Nelumbo nucifera HOM05D000574 ORTHO05D002645 5.3e-17 91.7 183 38.8
Atru.chr12.43 Acer truncatum HOM05D000574 ORTHO05D002645 6.9e-17 91.3 183 37.7
Potri.010G188200 Populus trichocarpa HOM05D000574 ORTHO05D002645 6.9e-17 91.3 191 37.7
Lj1C957G1 Lonicera japonica HOM05D000574 ORTHO05D002645 1.5e-16 90.1 181 35.4
Gohir.A05G304400 Gossypium hirsutum HOM05D000574 ORTHO05D002645 2.0e-16 89.7 176 34.7
FvH4_7g24540 Fragaria vesca HOM05D000574 ORTHO05D002645 2.6e-16 89.4 179 35.8
TAR636G2550 Trochodendron aralioides HOM05D000574 ORTHO05D002645 2.6e-16 89.4 177 36.2
CSS0001146 Camellia sinensis var. sinensis HOM05D000574 ORTHO05D002645 3.4e-16 89.0 202 37.1
Duzib106G1481 Durio zibethinus HOM05D000574 ORTHO05D002645 3.4e-16 89.0 154 37.7
Sabra10G0145000 Salix brachista HOM05D000574 ORTHO05D002645 3.4e-16 89.0 202 35.6
CSS0008949 Camellia sinensis var. sinensis HOM05D000574 ORTHO05D002645 4.5e-16 88.6 202 38.6
Dinv28649 Davidia involucrata HOM05D000574 ORTHO05D002645 4.5e-16 88.6 196 35.2
TPR.G11215 Trifolium pratense HOM05D000574 ORTHO05D002645 7.6e-16 87.8 180 35.6
Actinidia34455 Actinidia chinensis HOM05D000574 ORTHO05D002645 9.9e-16 87.4 197 36.0
ClCG11G006090 Citrullus lanatus HOM05D000574 ORTHO05D002645 9.9e-16 87.4 183 36.1
Actinidia33921 Actinidia chinensis HOM05D000574 ORTHO05D002645 1.3e-15 87.0 185 34.6
CSS0041864 Camellia sinensis var. sinensis HOM05D000574 ORTHO05D002645 2.2e-15 86.3 178 34.3
Gohir.D05G303400 Gossypium hirsutum HOM05D000574 ORTHO05D002645 2.9e-15 85.9 176 34.1
PSO170G2216 Papaver somniferum HOM05D000574 ORTHO05D002645 2.9e-15 85.9 188 33.5
RcHm_v2.0_Chr1g0370371 Rosa chinensis HOM05D000574 ORTHO05D002645 2.9e-15 85.9 178 38.8
Actinidia23886 Actinidia chinensis HOM05D000574 ORTHO05D002645 3.8e-15 85.5 198 34.8
Duzib114G0392 Durio zibethinus HOM05D000574 ORTHO05D002645 3.8e-15 85.5 179 34.1
Gorai.009G322600 Gossypium raimondii HOM05D000574 ORTHO05D002645 3.8e-15 85.5 176 34.1
Thecc.10G015600 Theobroma cacao HOM05D000574 ORTHO05D002645 3.8e-15 85.5 179 35.2
MELO3C008299.2 Cucumis melo HOM05D000574 ORTHO05D002645 4.9e-15 85.1 187 34.8
QL01p038534 Quercus lobata HOM05D000574 ORTHO05D002645 6.4e-15 84.7 179 36.3
Aqoxy2G00878 Aquilegia oxysepala HOM05D000574 ORTHO05D002645 8.4e-15 84.3 182 34.6
Peaxi162Scf00825g00416 Petunia axillaris HOM05D000574 ORTHO05D002645 8.4e-15 84.3 183 35.5
CsaV3_6G001870 Cucumis sativus L. HOM05D000574 ORTHO05D002645 1.1e-14 84.0 187 34.2
Rhsim03G0144300 Rhododendron simsii HOM05D000574 ORTHO05D002645 1.9e-14 83.2 169 39.1
vmacro14596 Vaccinium macrocarpon HOM05D000574 ORTHO05D002645 1.9e-14 83.2 158 35.4
Medtr3g070850 Medicago truncatula HOM05D000574 ORTHO05D002645 5.4e-14 81.6 180 33.9
Sed0026367 Sechium edule HOM05D000574 ORTHO05D002645 9.3e-14 80.9 177 35.0
Lalb_Chr11g0075001 Lupinus albus HOM05D000574 ORTHO05D002645 1.2e-13 80.5 191 34.6
PSO017G5049 Papaver somniferum HOM05D000574 ORTHO05D002645 1.2e-13 80.5 185 34.1
COL.COLO4_25739 Corchorus olitorius HOM05D000574 ORTHO05D002645 1.6e-13 80.1 183 34.4
TWI73G1249 Tripterygium wilfordii HOM05D000574 ORTHO05D002645 1.6e-13 80.1 177 32.8
Ciclev10030554m.g Citrus clementina HOM05D000574 ORTHO05D002645 2.1e-13 79.7 175 34.9
Manes.07G130100 Manihot esculenta HOM05D000574 ORTHO05D002645 2.7e-13 79.3 178 34.8
Haze_24337 Corylus avellana HOM05D000574 ORTHO05D002645 3.5e-13 79.0 193 33.2
Glyma.18G026600 Glycine max HOM05D000574 ORTHO05D002645 3.5e-13 79.0 190 34.2
Glyma.11G230700 Glycine max HOM05D000574 ORTHO05D002645 4.6e-13 78.6 188 33.5
CSS0028358 Camellia sinensis var. sinensis HOM05D000574 ORTHO05D002645 6.0e-13 78.2 178 34.3
vmacro06965 Vaccinium macrocarpon HOM05D000574 ORTHO05D002645 6.0e-13 78.2 186 34.4
MD11G1072900 Malus domestica HOM05D000574 ORTHO05D002645 7.9e-13 77.8 191 35.1
Phvul.008G223600 Phaseolus vulgaris HOM05D000574 ORTHO05D002645 1.0e-12 77.4 165 35.2
Phvul.001G243900 Phaseolus vulgaris HOM05D000574 ORTHO05D002645 1.3e-12 77.0 172 34.3
FAN11G1616 Fragaria x ananassa HOM05D000574 ORTHO05D002645 2.3e-12 76.3 173 34.1
FAN16G2627 Fragaria x ananassa HOM05D000574 ORTHO05D002645 2.3e-12 76.3 173 34.1
Hma1.2p1_0703F.1_g206350 Hydrangea macrophylla HOM05D000574 ORTHO05D002645 2.3e-12 76.3 175 33.1
Nitab4.5_0001516g0020 Nicotiana tabacum HOM05D000574 ORTHO05D002645 2.3e-12 76.3 185 34.6
FvH4_3g38740 Fragaria vesca HOM05D000574 ORTHO05D002645 3.9e-12 75.5 173 34.1
FAN25G3577 Fragaria x ananassa HOM05D000574 ORTHO05D002645 3.9e-12 75.5 173 34.1
Hund13867 Selenicereus undatus HOM05D000574 ORTHO05D002645 3.9e-12 75.5 154 37.0
Prupe.6G056400 Prunus persica HOM05D000574 ORTHO05D002645 5.1e-12 75.1 189 35.4
FAN21G0346 Fragaria x ananassa HOM05D000574 ORTHO05D002645 6.7e-12 74.7 173 34.1
VMungo0647G0364 Vigna mungo HOM05D000574 ORTHO05D002645 6.7e-12 74.7 170 34.1
Nn2g13139 Nelumbo nucifera HOM05D000574 ORTHO05D002645 8.7e-12 74.3 180 33.9
Cfa011706 Carpinus fangiana HOM05D000574 ORTHO05D002645 1.1e-11 73.9 193 31.1
CiPaw.13G076600 Carya illinoinensis HOM05D000574 ORTHO05D002645 1.1e-11 73.9 185 32.4
RcHm_v2.0_Chr5g0069891 Rosa chinensis HOM05D000574 ORTHO05D002645 1.1e-11 73.9 173 35.3
Sed0025315 Sechium edule HOM05D000574 ORTHO05D002645 1.1e-11 73.9 175 30.9
CANSAT54G0082 Cannabis sativa HOM05D000574 ORTHO05D002645 1.5e-11 73.6 191 32.5
Psat5g129160 Pisum sativum HOM05D000574 ORTHO05D002645 1.9e-11 73.2 175 32.0
Solyc06g051460.4 Solanum lycopersicum HOM05D000574 ORTHO05D002645 1.9e-11 73.2 134 38.1
Gohir.A05G088000 Gossypium hirsutum HOM05D000574 ORTHO05D002645 2.5e-11 72.8 51 66.7
Gohir.D05G089100 Gossypium hirsutum HOM05D000574 ORTHO05D002645 2.5e-11 72.8 51 66.7
Gorai.009G091300 Gossypium raimondii HOM05D000574 ORTHO05D002645 2.5e-11 72.8 51 66.7
Nitab4.5_0001227g0050 Nicotiana tabacum HOM05D000574 ORTHO05D002645 2.5e-11 72.8 180 35.0
COL.COLO4_19171 Corchorus olitorius HOM05D000574 ORTHO05D002645 3.3e-11 72.4 195 32.3
CAN.G19.14 Capsicum annuum HOM05D000574 ORTHO05D002645 4.3e-11 72.0 185 33.0
Sopen06g017420 Solanum pennellii HOM05D000574 ORTHO05D002645 5.6e-11 71.6 182 32.4
Lj2C1083G2 Lonicera japonica HOM05D000574 ORTHO05D002645 7.4e-11 71.2 100 42.0
MD03G1068500 Malus domestica HOM05D000574 ORTHO05D002645 7.4e-11 71.2 190 34.7
PGSC0003DMG400016941 Solanum tuberosum HOM05D000574 ORTHO05D002645 7.4e-11 71.2 204 32.4
Hma1.2p1_0962F.1_g241830 Hydrangea macrophylla HOM05D000574 ORTHO05D002645 9.6e-11 70.9 191 32.5
VMungo1383G1088 Vigna mungo HOM05D000574 ORTHO05D002645 9.6e-11 70.9 176 34.1
Lj1A136T33 Lonicera japonica HOM05D000574 ORTHO05D002645 1.3e-10 70.5 51 64.7
Manes.02G195400 Manihot esculenta HOM05D000574 ORTHO05D002645 1.6e-10 70.1 200 31.5
Ca_15129_v3 Cicer arietinum L. HOM05D000574 ORTHO05D002645 2.8e-10 69.3 184 29.3
Duzib168G1374 Durio zibethinus HOM05D000574 ORTHO05D002645 6.2e-10 68.2 50 64.0
Duzib150G0927 Durio zibethinus HOM05D000574 ORTHO05D002645 1.4e-09 67.0 51 58.8
Rhsim01G0236800 Rhododendron simsii HOM05D000574 ORTHO05D002645 1.8e-09 66.6 172 32.0
Cc02_g06450 Coffea canephora HOM05D000574 ORTHO05D002645 2.4e-09 66.2 199 32.7
MBI15_g38430_MAGBIO Magnolia biondii HOM05D000574 ORTHO05D002645 3.1e-09 65.9 198 30.3
Thecc.09G300100 Theobroma cacao HOM05D000574 ORTHO05D002645 3.1e-09 65.9 51 60.8
Eucgr.J00203 Eucalyptus grandis HOM05D000574 ORTHO05D002645 4.0e-09 65.5 180 31.7
ATR0681G118 Amborella trichopoda HOM05D000574 ORTHO05D002645 5.3e-09 65.1 51 54.9
GSVIVG01024729001 Vitis vinifera HOM05D000574 ORTHO05D002645 5.3e-09 65.1 145 36.6
arahy.Tifrunner.gnm1.ann1.P5LGTJ Arachis hypogaea HOM05D000574 ORTHO05D002645 1.2e-08 63.9 187 29.9
Cc01_g14300 Coffea canephora HOM05D000574 ORTHO05D002645 1.2e-08 63.9 47 63.8
Medtr7g056197 Medicago truncatula HOM05D000574 ORTHO05D002645 1.2e-08 63.9 51 58.8
PSO339G0086 Papaver somniferum HOM05D000574 ORTHO05D002645 1.2e-08 63.9 155 33.5
PSO339G3911 Papaver somniferum HOM05D000574 ORTHO05D002645 1.2e-08 63.9 155 33.5
DCAR_028574 Daucus carota HOM05D000574 ORTHO05D002645 1.5e-08 63.5 182 29.7
TWI53G1685 Tripterygium wilfordii HOM05D000574 ORTHO05D002645 1.5e-08 63.5 177 30.5
Aa31LG5G19440 Aethionema arabicum HOM05D000574 ORTHO05D002645 2.0e-08 63.2 146 31.5
CiPaw.14G058700 Carya illinoinensis HOM05D000574 ORTHO05D002645 2.6e-08 62.8 186 31.7
Gorai.011G289100 Gossypium raimondii HOM05D000574 ORTHO05D002645 2.6e-08 62.8 162 34.0
Sc21g0006420 Simmondsia chinensis HOM05D000574 ORTHO05D002645 2.6e-08 62.8 163 32.5
arahy.Tifrunner.gnm1.ann1.5TX9RQ Arachis hypogaea HOM05D000574 ORTHO05D002645 3.4e-08 62.4 183 30.6
LjContig00155g0009749 Lotus japonicus HOM05D000574 ORTHO05D002645 3.4e-08 62.4 184 33.2
Lj6g0010333 Lotus japonicus HOM05D000574 ORTHO05D002645 4.5e-08 62.0 186 30.1
THA.LOC104826286 Tarenaya hassleriana HOM05D000574 ORTHO05D002645 7.6e-08 61.2 146 36.3
EL10Ac7g16181 Beta vulgaris HOM05D000574 ORTHO05D002645 9.9e-08 60.8 50 60.0
Lsat_1_v5_gn_5_171201 Lactuca sativa HOM05D000574 ORTHO05D002645 9.9e-08 60.8 51 54.9
CDE10G0350 Ceratophyllum demersum HOM05D000574 ORTHO05D002645 1.3e-07 60.5 179 30.7
Gohir.A10G237100 Gossypium hirsutum HOM05D000574 ORTHO05D002645 1.3e-07 60.5 162 33.3
Gohir.D10G248800 Gossypium hirsutum HOM05D000574 ORTHO05D002645 1.7e-07 60.1 162 33.3
Sabra16G0153800 Salix brachista HOM05D000574 ORTHO05D002645 1.7e-07 60.1 190 29.5
CDE10G0199 Ceratophyllum demersum HOM05D000574 ORTHO05D002645 2.2e-07 59.7 179 29.6
Ca_14942_v3 Cicer arietinum L. HOM05D000574 ORTHO05D002645 2.2e-07 59.7 183 30.6
Medtr5g071060 Medicago truncatula HOM05D000574 ORTHO05D002645 2.2e-07 59.7 175 32.0
MELO3C020543.2 Cucumis melo HOM05D000574 ORTHO05D002645 2.9e-07 59.3 101 41.6
Hund20991 Selenicereus undatus HOM05D000574 ORTHO05D002645 2.9e-07 59.3 50 60.0
Glyma.18G062300 Glycine max HOM05D000574 ORTHO05D002645 3.8e-07 58.9 176 31.2
arahy.Tifrunner.gnm1.ann1.UDFI8U Arachis hypogaea HOM05D000574 ORTHO05D002645 4.9e-07 58.5 173 28.9
arahy.Tifrunner.gnm1.ann1.W50AUC Arachis hypogaea HOM05D000574 ORTHO05D002645 4.9e-07 58.5 173 28.9
Cpa.g.sc112.7 Carica papaya HOM05D000574 ORTHO05D002645 4.9e-07 58.5 192 29.2
CsaV3_1G036230 Cucumis sativus L. HOM05D000574 ORTHO05D002645 6.4e-07 58.2 101 41.6
Lalb_Chr18g0050971 Lupinus albus HOM05D000574 ORTHO05D002645 6.4e-07 58.2 170 31.8
CAN.G367.2 Capsicum annuum HOM05D000574 ORTHO05D002645 8.4e-07 57.8 46 58.7
Lj6g0018627 Lotus japonicus HOM05D000574 ORTHO05D002645 8.4e-07 57.8 169 30.8
Potri.001G252500 Populus trichocarpa HOM05D000574 ORTHO05D002645 8.4e-07 57.8 168 31.5
Potri.009G046700 Populus trichocarpa HOM05D000574 ORTHO05D002645 8.4e-07 57.8 169 32.0
AUR62020145 Chenopodium quinoa HOM05D000574 ORTHO05D002645 1.1e-06 57.4 48 60.4
Glyma.02G226900 Glycine max HOM05D000574 ORTHO05D002645 1.1e-06 57.4 189 29.6
HanXRQChr01g0011231 Helianthus annuus HOM05D000574 ORTHO05D002645 1.1e-06 57.4 51 52.9
Medtr3g464150 Medicago truncatula HOM05D000574 ORTHO05D002645 1.1e-06 57.4 170 31.2
unitig_26.g9452 Utricularia gibba HOM05D000574 ORTHO05D002645 1.1e-06 57.4 41 68.3
unitig_749.g13575 Utricularia gibba HOM05D000574 ORTHO05D002645 1.1e-06 57.4 41 68.3
Nitab4.5_0001150g0030 Nicotiana tabacum HOM05D000574 ORTHO05D002645 1.4e-06 57.0 50 56.0
PGR119G0709 Punica granatum HOM05D000574 ORTHO05D002645 1.4e-06 57.0 186 27.4
Solyc09g055230.3 Solanum lycopersicum HOM05D000574 ORTHO05D002645 1.4e-06 57.0 46 58.7
Glyma.14G193900 Glycine max HOM05D000574 ORTHO05D002645 1.9e-06 56.6 175 30.3
Lsat_1_v5_gn_2_123560 Lactuca sativa HOM05D000574 ORTHO05D002645 1.9e-06 56.6 51 52.9
Peaxi162Scf00259g00104 Petunia axillaris HOM05D000574 ORTHO05D002645 1.9e-06 56.6 51 52.9
PGSC0003DMG400026732 Solanum tuberosum HOM05D000574 ORTHO05D002645 1.9e-06 56.6 46 58.7
DCAR_018952 Daucus carota HOM05D000574 ORTHO05D002645 2.4e-06 56.2 47 53.2
Nitab4.5_0000684g0090 Nicotiana tabacum HOM05D000574 ORTHO05D002645 2.4e-06 56.2 46 58.7
Oeu021975.2 Olea europaea HOM05D000574 ORTHO05D002645 2.4e-06 56.2 47 55.3
Os11g0104300 Oryza sativa ssp. japonica HOM05D000574 ORTHO05D002645 2.4e-06 56.2 197 26.9
Phvul.008G261000 Phaseolus vulgaris HOM05D000574 ORTHO05D002645 2.4e-06 56.2 188 29.8
SalBow6G1757 Salvia bowleyana HOM05D000574 ORTHO05D002645 2.4e-06 56.2 180 32.2
ECA248G1282 Erigeron canadensis HOM05D000574 ORTHO05D002645 3.2e-06 55.8 176 31.2
Glyma.11G174500 Glycine max HOM05D000574 ORTHO05D002645 3.2e-06 55.8 48 60.4
HPP92_023741 Vanilla planifolia HOM05D000574 ORTHO05D002645 3.2e-06 55.8 78 41.0
ClCG03G000700 Citrullus lanatus HOM05D000574 ORTHO05D002645 4.2e-06 55.5 51 52.9
Hund18842 Selenicereus undatus HOM05D000574 ORTHO05D002645 5.5e-06 55.1 48 58.3
VMungo0647G0659 Vigna mungo HOM05D000574 ORTHO05D002645 5.5e-06 55.1 47 59.6
BcaC07g42448 Brassica carinata HOM05D000574 ORTHO05D002645 7.1e-06 54.7 136 32.4
Os12g0104300 Oryza sativa ssp. japonica HOM05D000574 ORTHO05D002645 7.1e-06 54.7 197 26.9
PSO384G5099 Papaver somniferum HOM05D000574 ORTHO05D002645 7.1e-06 54.7 51 52.9
Sopen09g017150 Solanum pennellii HOM05D000574 ORTHO05D002645 7.1e-06 54.7 46 56.5
AT1G07200 Arabidopsis thaliana HOM05D000574 ORTHO05D002645 9.3e-06 54.3 154 31.8
BraA05t19596Z Brassica rapa HOM05D000574 ORTHO05D002645 9.3e-06 54.3 159 30.8


User provided reference genes

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