Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 1.7e-154 549.3 268 100.0
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 3.2e-142 508.4 268 91.0
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 3.0e-140 501.9 268 88.8
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 5.2e-140 501.1 268 89.9
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 1.5e-139 499.6 267 90.3
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 3.4e-139 498.4 268 88.8
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 5.7e-139 497.7 268 88.1
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 2.8e-138 495.4 269 87.7
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 3.7e-138 495.0 268 87.3
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 3.7e-138 495.0 268 87.7
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 6.3e-138 494.2 305 81.3
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 6.3e-138 494.2 268 87.7
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 8.3e-138 493.8 268 87.3
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 8.3e-138 493.8 268 87.3
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.8e-137 492.7 268 86.9
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.4e-137 492.3 268 87.3
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 3.1e-137 491.9 268 86.9
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 5.4e-137 491.1 268 86.6
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 5.4e-137 491.1 268 86.9
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 5.4e-137 491.1 268 87.7
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 7.0e-137 490.7 263 87.8
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 3.5e-136 488.4 267 88.0
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 4.5e-136 488.0 268 86.2
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 4.5e-136 488.0 268 86.2
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 5.9e-136 487.6 268 86.6
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 7.7e-136 487.3 268 86.6
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 7.7e-136 487.3 270 85.6
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 7.7e-136 487.3 268 85.4
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.7e-135 486.1 268 87.3
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 1.1e-134 483.4 269 86.6
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.5e-134 483.0 268 85.4
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 3.3e-134 481.9 268 85.8
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 9.5e-134 480.3 268 85.8
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 9.5e-134 480.3 268 84.7
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 1.2e-133 479.9 268 84.3
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 1.2e-133 479.9 268 84.0
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.6e-133 479.6 268 85.1
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.1e-133 479.2 270 84.8
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 2.1e-133 479.2 268 84.3
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 2.1e-133 479.2 268 85.4
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 2.8e-133 478.8 268 85.1
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.6e-133 478.4 268 84.7
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.6e-133 478.4 268 84.7
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 4.7e-133 478.0 266 85.0
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 8.0e-133 477.2 268 84.3
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 8.0e-133 477.2 268 84.3
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 2.3e-132 475.7 273 84.6
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.3e-132 475.7 270 84.4
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 6.8e-132 474.2 268 85.1
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.5e-131 473.0 268 83.2
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.6e-131 472.2 268 82.8
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 2.6e-131 472.2 268 83.6
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 3.4e-131 471.9 268 82.5
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 5.7e-131 471.1 268 82.8
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.7e-131 471.1 268 82.8
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.3e-130 467.6 268 83.2
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-129 466.1 274 81.4
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-129 466.1 274 81.0
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 2.4e-129 465.7 268 83.2
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.4e-129 465.7 280 79.3
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.1e-129 465.3 268 81.3
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.4e-129 464.5 274 81.0
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 7.0e-129 464.2 267 82.4
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 9.2e-129 463.8 268 81.3
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.6e-128 463.0 268 82.1
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 1.6e-128 463.0 268 80.6
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 3.5e-128 461.8 269 82.2
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.0e-127 460.3 268 80.2
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 1.0e-127 460.3 268 82.5
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 1.0e-127 460.3 267 82.0
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.7e-127 459.5 268 81.3
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-127 459.1 268 79.9
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 2.3e-127 459.1 267 80.9
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 2.9e-127 458.8 268 81.0
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 2.9e-127 458.8 268 79.9
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 8.6e-127 457.2 251 88.8
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 2.5e-126 455.7 268 80.2
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 2.5e-126 455.7 268 82.1
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 3.3e-126 455.3 268 81.3
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 3.3e-126 455.3 268 78.7
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 7.3e-126 454.1 268 80.2
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.2e-125 453.4 268 82.1
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 1.6e-125 453.0 268 79.9
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.1e-125 452.6 268 79.1
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 2.8e-125 452.2 268 79.5
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 6.1e-125 451.1 270 80.7
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 6.1e-125 451.1 268 78.7
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 8.0e-125 450.7 268 78.0
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.4e-124 449.9 269 79.9
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 3.0e-124 448.7 268 79.1
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 2.6e-123 445.7 269 79.2
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 4.4e-123 444.9 269 79.2
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 5.8e-123 444.5 268 79.1
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 5.8e-123 444.5 268 79.5
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 9.8e-123 443.7 268 80.2
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 9.8e-123 443.7 268 80.2
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.3e-122 443.4 274 79.9
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.7e-122 443.0 269 78.8
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 2.2e-122 442.6 268 80.6
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 2.9e-122 442.2 268 79.1
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 6.4e-122 441.0 243 86.8
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 6.4e-122 441.0 268 76.5
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 2.4e-121 439.1 261 78.2
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 3.2e-121 438.7 268 79.1
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 7.0e-121 437.6 265 79.2
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 9.2e-121 437.2 268 78.0
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 3.5e-120 435.3 268 80.2
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 7.8e-120 434.1 268 77.2
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-119 433.3 268 78.4
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 2.3e-119 432.6 285 74.4
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 3.0e-119 432.2 268 75.4
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.1e-118 430.3 267 76.4
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 4.3e-118 428.3 268 78.4
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.7e-117 424.9 268 76.9
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 1.1e-116 423.7 267 72.7
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.4e-116 423.3 268 73.1
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 4.0e-116 421.8 266 74.8
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 6.8e-116 421.0 268 74.3
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 2.0e-115 419.5 267 73.0
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 4.4e-115 418.3 268 78.0
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 1.3e-114 416.8 268 75.4
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.7e-114 415.2 268 73.5
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.4e-113 411.4 270 73.0
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.0e-113 411.0 276 71.0
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.0e-113 411.0 270 73.0
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-112 410.2 276 71.4
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-111 406.4 276 71.0
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.3e-111 406.0 270 70.7
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.1e-110 403.7 270 70.4
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.5e-110 403.3 271 74.9
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.3e-110 401.7 270 70.0
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 4.3e-110 401.7 268 70.5
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 7.3e-110 401.0 266 70.7
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 3.1e-108 395.6 235 77.9
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.2e-108 394.8 269 68.0
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 1.5e-107 393.3 236 80.5
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.0e-107 392.9 269 69.1
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.6e-107 392.5 269 69.5
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 2.2e-106 389.4 269 69.1
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 8.3e-106 387.5 270 69.6
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 4.1e-105 385.2 269 68.8
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 7.1e-105 384.4 270 67.4
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.2e-104 383.6 212 86.3
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 3.5e-104 382.1 270 68.1
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.7e-103 379.8 269 67.3
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.2e-96 357.1 249 67.1
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 7.8e-96 354.4 216 80.6
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.7e-95 353.2 211 80.6
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.6e-94 348.2 197 85.3
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 2.9e-90 335.9 294 57.8
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.2e-89 332.0 189 82.0
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 2.7e-88 329.3 187 82.9
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 5.1e-79 298.5 267 55.1
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 6.7e-63 245.0 189 64.6
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 1.9e-62 243.4 142 81.0
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.2e-59 234.2 180 66.1
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-59 233.8 133 82.7
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.2e-56 224.2 270 43.7
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 5.1e-55 218.8 136 74.3
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 2.5e-54 216.5 187 62.6
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 7.7e-51 204.9 267 41.9
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 9.1e-44 181.4 268 42.5
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.7e-40 169.9 278 36.7
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 5.3e-36 155.6 129 64.3
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 3.5e-35 152.9 88 81.8
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 1.3e-34 151.0 108 70.4
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 3.8e-34 149.4 82 86.6
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.3e-31 140.2 77 83.1
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.0e-26 124.8 67 86.6
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.5e-25 119.0 68 80.9
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 3.6e-24 116.3 107 55.1
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 1.4e-20 104.4 67 64.2
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 4.2e-17 92.8 68 64.7
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 5.7e-14 82.4 60 63.3
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 2.8e-13 80.1 65 61.5
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 5.4e-12 75.9 49 69.4
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 5.4e-12 75.9 49 69.4
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.0e-10 71.6 57 63.2
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 1.7e-10 70.9 57 61.4
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 2.1e-08 63.9 50 64.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.7e-08 62.8 40 67.5


User provided reference genes

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