Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 3310.0 1717 100.0
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2620.1 1672 82.5
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2605.9 1696 81.3
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 2404.8 1671 76.3
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2185.2 1676 70.8
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2167.5 1680 69.2
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2161.0 1682 69.0
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2146.7 1683 68.9
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2135.5 1673 69.7
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2080.1 1673 68.0
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 2073.5 1668 67.7
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 2066.6 1662 67.9
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2063.5 1662 67.7
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 2053.9 1662 67.5
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 2050.4 1673 66.8
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2042.7 1678 66.1
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2042.3 1673 66.5
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2040.4 1699 65.8
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2040.0 1673 66.2
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2038.8 1674 66.5
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2022.3 1673 66.0
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2010.7 1676 64.1
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1992.6 1677 64.0
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1987.6 1731 62.8
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 1986.1 1700 63.1
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1972.6 1677 63.9
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 1968.7 1672 65.7
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 1968.0 1716 63.6
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 1900.9 1683 61.7
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 1892.5 1676 62.4
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 1885.5 1676 60.6
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 1885.5 1677 61.2
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 1882.1 1676 61.2
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 1864.7 1677 60.5
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 1846.2 1687 61.3
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 1841.2 1678 61.0
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 1820.4 1675 60.2
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 1803.9 1698 59.2
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 1803.1 1674 59.8
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1798.5 1595 61.5
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 1785.8 1681 58.7
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 1769.6 1676 58.5
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 1765.7 1524 61.9
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 1743.8 1687 57.3
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 1742.2 1677 58.9
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1723.8 1547 60.9
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 1721.4 1698 57.5
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1709.9 1672 57.1
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 1702.2 1685 56.0
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 1696.0 1676 56.9
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1692.2 1675 56.8
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1689.1 1675 56.8
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1669.1 1708 55.8
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1648.6 1563 59.3
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1642.5 1676 55.7
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1641.3 1713 55.3
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 1630.5 1685 54.1
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 1619.4 1677 55.4
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1613.2 1692 54.4
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1601.3 1665 54.8
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1590.9 1672 53.9
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1589.3 1678 54.1
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1588.5 1518 57.4
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1565.8 1673 54.2
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1548.1 1681 54.5
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1546.6 1672 53.0
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1546.2 1673 54.4
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1529.2 1683 54.0
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1506.1 1668 52.7
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1481.1 1711 50.7
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1464.9 1722 51.2
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1451.4 1675 51.0
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1432.5 1677 51.9
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1423.7 1679 51.1
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1349.3 1693 48.1
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1320.8 1022 70.6
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 0.0e+00 1287.3 1299 53.3
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1258.8 1143 61.3
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 0.0e+00 1196.8 1035 62.3
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1093.2 1131 56.6
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1088.2 1489 42.6
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 7.0e-307 1058.1 1040 55.0
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 3.9e-305 1052.4 1295 45.3
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 8.1e-295 1018.1 1386 42.7
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 4.1e-254 882.9 1794 36.7
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 5.1e-249 865.9 885 53.9
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 1.7e-215 754.6 626 64.2
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 2.3e-209 734.2 1760 32.6
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 4.6e-197 693.3 1421 34.8
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 3.9e-172 610.5 1307 33.1
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 6.0e-141 506.9 565 56.6
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 2.0e-120 438.7 460 53.9
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.9e-111 408.3 504 48.0
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.8e-111 407.9 306 69.6
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 1.3e-106 392.9 2213 24.8
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 8.2e-106 390.2 346 64.5
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 4.5e-88 331.3 347 63.4
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 1.0e-79 303.5 304 64.1
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 5.0e-79 301.2 375 54.7
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 3.0e-55 222.2 203 68.0
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 6.9e-52 211.1 176 70.5
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 3.4e-51 208.8 170 70.0
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 5.8e-43 181.4 141 73.8
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 3.2e-41 175.6 136 60.3
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 8.7e-39 167.5 117 71.8
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 8.1e-37 161.0 135 63.7
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.8e-36 159.8 333 43.5
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 1.7e-34 153.3 213 45.1
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 2.4e-28 132.9 199 48.7
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 1.5e-22 113.6 85 68.2
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 9.7e-22 110.9 375 37.1
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 3.4e-19 102.4 143 43.4
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 2.9e-18 99.4 65 73.8
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 1.4e-17 97.1 65 76.9
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.3e-13 84.0 82 68.3
Psat7g121640 Pisum sativum HOM05D004910 ORTHO05D030483 1.0e-10 74.3 114 39.5
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 4.2e-09 68.9 51 64.7
QL02p028186 Quercus lobata HOM05D000003 ORTHO05D000006 6.1e-08 65.1 36 66.7
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 1.0e-07 64.3 36 66.7
QL06p035637 Quercus lobata HOM05D000141 ORTHO05D004993 1.8e-07 63.5 36 66.7
QL10p002846 Quercus lobata HOM05D000003 ORTHO05D000006 8.8e-07 61.2 36 61.1
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.3e-06 59.3 53 58.5
QL05p036287 Quercus lobata HOM05D000003 ORTHO05D000006 9.7e-06 57.8 35 62.9


User provided reference genes

Program Settings