Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.2e-255 885.2 462 100.0
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.8e-161 573.2 479 68.9
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.6e-157 558.9 478 67.2
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.7e-151 540.0 474 66.2
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 4.6e-144 515.4 605 54.0
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.4e-140 503.8 478 61.1
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.3e-140 503.1 469 61.6
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.0e-139 500.0 481 61.5
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 3.8e-138 495.7 477 59.3
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 3.8e-138 495.7 480 59.6
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.1e-137 494.2 475 59.8
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.4e-137 493.8 475 59.2
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 3.2e-137 492.7 478 59.6
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 7.1e-137 491.5 481 59.5
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 9.2e-137 491.1 482 58.9
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 9.2e-137 491.1 473 60.7
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.2e-136 490.7 482 59.8
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 6.0e-136 488.4 471 59.9
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 6.0e-136 488.4 481 61.3
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 8.6e-135 484.6 478 60.5
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.3e-134 482.3 475 59.8
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 5.6e-134 481.9 475 59.8
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 7.3e-134 481.5 471 60.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 2.1e-133 479.9 471 57.7
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.2e-133 478.4 475 59.8
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 8.1e-133 478.0 476 57.1
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 8.1e-133 478.0 476 58.2
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.1e-132 477.6 461 59.0
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.8e-132 476.9 476 58.0
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.4e-132 476.5 472 58.3
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 4.0e-132 475.7 469 58.6
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 6.9e-132 474.9 395 69.1
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 6.4e-130 468.4 478 58.4
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.4e-129 467.2 474 55.9
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.1e-129 464.9 472 56.8
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.6e-128 463.8 488 55.5
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 4.6e-128 462.2 482 59.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 7.8e-128 461.5 479 56.2
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.0e-127 461.1 472 58.1
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 3.9e-127 459.1 485 57.7
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.9e-126 456.8 479 56.6
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.3e-126 455.7 477 57.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.1e-125 453.4 478 56.3
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 4.8e-125 452.2 471 56.1
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 8.1e-125 451.4 476 56.5
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.4e-124 450.7 466 56.9
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.0e-123 446.8 476 55.0
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.6e-123 446.4 474 55.5
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.6e-123 446.4 474 55.5
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 4.5e-123 445.7 473 56.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.6e-123 444.9 474 56.3
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.7e-122 443.7 477 55.3
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.2e-122 443.4 485 55.5
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 6.4e-122 441.8 472 56.1
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.4e-121 439.9 486 53.1
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.8e-119 433.7 470 55.5
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.1e-119 432.2 466 55.8
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 5.1e-119 432.2 486 55.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-117 427.6 470 55.5
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.4e-116 423.3 465 53.5
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 3.1e-116 422.9 466 55.6
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.6e-115 419.9 463 54.6
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.9e-114 416.4 463 54.0
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.4e-113 414.1 463 53.8
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 4.2e-113 412.5 465 53.3
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.5e-113 412.1 477 52.0
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.2e-112 411.0 486 51.0
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.6e-112 410.6 537 48.0
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 7.9e-112 408.3 481 52.2
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.3e-111 407.5 473 52.0
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 3.0e-111 406.4 469 52.5
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.1e-110 404.4 470 51.5
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 5.6e-110 402.1 481 51.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.1e-108 397.9 407 56.0
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.8e-108 397.1 471 50.1
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.4e-108 396.7 498 48.4
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 3.1e-108 396.4 467 50.3
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 4.0e-108 396.0 487 50.1
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.5e-107 394.0 472 49.8
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 4.5e-107 392.5 350 60.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.6e-107 391.7 473 50.7
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.7e-106 390.6 468 48.3
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.9e-106 389.0 478 50.0
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 6.5e-106 388.7 467 49.5
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.4e-106 388.3 471 50.1
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.4e-105 387.5 465 49.9
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.5e-105 386.7 471 51.2
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.6e-104 384.0 467 50.3
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.6e-104 382.5 480 49.4
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 6.0e-104 382.1 469 48.4
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 7.9e-104 381.7 467 49.9
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.3e-103 380.9 482 48.3
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.3e-103 380.9 470 48.3
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.3e-103 380.2 469 49.3
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.0e-103 379.8 481 48.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 3.9e-103 379.4 465 48.8
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 3.9e-103 379.4 472 50.4
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 8.7e-103 378.3 504 47.2
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 5.7e-102 375.6 467 50.1
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 7.4e-102 375.2 475 47.4
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 7.4e-102 375.2 473 49.0
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.6e-101 374.0 467 48.4
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.8e-101 373.2 465 49.2
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.8e-101 372.5 444 53.4
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.6e-99 366.7 472 48.7
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 5.9e-99 365.5 495 47.9
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 5.5e-97 359.0 495 46.5
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 7.2e-97 358.6 533 43.7
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 9.3e-97 358.2 466 48.1
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.3e-95 354.4 281 63.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 3.0e-95 353.2 487 45.6
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 8.7e-95 351.7 470 46.0
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.5e-94 350.9 490 47.3
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.9e-94 350.5 469 47.1
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 6.3e-93 345.5 470 46.0
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 4.1e-92 342.8 464 46.8
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.2e-91 341.3 478 45.2
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.6e-91 340.1 437 48.3
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.6e-91 340.1 416 48.6
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.7e-90 337.4 462 47.0
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 3.8e-90 336.3 464 47.0
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 5.0e-90 335.9 308 58.8
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 3.2e-89 333.2 419 48.9
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 3.6e-88 329.7 419 48.7
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.4e-86 322.8 448 45.1
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.8e-85 319.3 423 48.7
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 3.1e-84 316.6 463 43.6
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.4e-83 313.2 454 47.1
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.9e-83 312.4 495 42.2
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.9e-82 310.1 376 51.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.9e-82 310.1 376 48.9
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 3.8e-82 309.7 392 45.9
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 9.4e-81 305.1 480 43.8
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.0e-79 301.6 381 52.0
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 7.4e-78 295.4 367 46.6
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.8e-76 290.8 309 51.8
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 3.8e-74 283.1 481 42.4
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.1e-72 277.3 372 45.7
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.1e-72 275.8 352 47.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 6.7e-71 272.3 218 64.2
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 2.0e-70 270.8 245 59.6
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 3.7e-69 266.5 361 43.8
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.4e-68 264.6 362 43.4
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.5e-65 254.6 375 42.4
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.5e-65 254.6 368 41.0
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.0e-63 248.4 384 45.3
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.2e-63 246.1 313 44.4
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.2e-63 246.1 313 44.4
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.7e-58 231.1 141 77.3
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.2e-57 226.5 305 44.3
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 9.5e-57 225.3 342 44.7
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.4e-54 216.5 462 35.1
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.4e-54 216.5 365 38.1
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.7e-51 207.2 297 41.8
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 9.5e-49 198.7 264 45.8
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.0e-47 193.4 232 49.1
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 1.2e-46 191.8 329 39.2
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.2e-46 191.8 367 37.1
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 4.4e-46 189.9 196 52.6
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 2.2e-45 187.6 317 38.8
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 2.9e-45 187.2 407 35.1
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 6.4e-45 186.0 200 53.0
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 8.6e-42 175.6 99 84.8
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.8e-40 170.6 305 36.4
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 4.6e-35 153.3 139 56.8
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.8e-32 144.1 206 44.2
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 3.1e-31 140.6 241 39.8
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 7.5e-30 136.0 76 86.8
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.0e-26 125.6 97 62.9
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 8.6e-26 122.5 82 70.7
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 6.2e-24 116.3 192 38.5
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.1e-23 115.5 207 38.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 8.9e-23 112.5 86 67.4
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-21 108.6 188 39.4
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 3.5e-19 100.5 63 77.8
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.0e-18 99.0 74 64.9
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.0e-18 99.0 124 50.8
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.0e-10 72.4 52 63.5


User provided reference genes

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