Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.2e-292 1009.2 549 100.0
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 2.5e-266 921.8 549 83.4
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 9.6e-266 919.8 549 84.7
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 8.7e-251 870.2 480 87.9
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.9e-250 869.0 480 88.1
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 3.3e-250 868.2 481 88.8
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 9.6e-250 866.7 480 87.5
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 3.8e-246 854.7 480 86.5
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 3.8e-246 854.7 553 80.3
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.9e-245 852.4 480 86.5
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 3.5e-244 848.2 479 86.2
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 4.6e-244 847.8 549 77.0
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 7.9e-244 847.0 552 76.6
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 2.3e-243 845.5 552 77.7
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.0e-243 845.1 479 86.0
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 3.9e-243 844.7 549 78.0
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.3e-242 841.3 479 85.6
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 5.6e-242 840.9 484 85.3
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 7.4e-242 840.5 479 85.6
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.3e-241 839.7 552 77.4
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 2.1e-241 839.0 481 84.6
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 3.1e-240 835.1 549 76.5
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 4.0e-240 834.7 554 75.3
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 5.3e-240 834.3 481 83.4
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 5.8e-239 830.9 549 75.6
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 7.6e-239 830.5 554 75.1
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.3e-238 829.7 554 75.1
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 8.4e-238 827.0 562 74.2
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 1.9e-237 825.9 562 74.0
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 2.5e-237 825.5 552 76.4
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 2.5e-237 825.5 556 74.8
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 3.2e-237 825.1 549 75.6
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 3.2e-237 825.1 556 74.8
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.2e-236 823.2 481 83.2
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 2.1e-236 822.4 479 83.5
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 6.0e-236 820.8 478 83.9
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.8e-235 819.3 481 84.2
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 6.7e-235 817.4 557 74.1
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.7e-235 817.4 481 83.2
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 8.7e-235 817.0 479 83.3
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 1.5e-234 816.2 478 83.3
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.9e-234 815.8 552 75.9
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 9.7e-234 813.5 478 83.1
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 1.6e-233 812.8 478 83.1
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 6.3e-233 810.8 480 82.1
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 6.3e-233 810.8 549 74.0
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 3.1e-232 808.5 481 82.3
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 5.3e-232 807.7 480 82.7
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.5e-231 806.2 469 82.3
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 2.0e-231 805.8 553 72.9
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 5.9e-231 804.3 481 80.0
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 2.9e-230 802.0 549 74.0
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 2.9e-230 802.0 549 74.1
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 2.9e-230 802.0 550 73.8
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 9.4e-229 797.0 480 79.2
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.2e-228 796.6 476 81.9
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.1e-228 795.8 550 73.6
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 3.6e-228 795.0 480 81.0
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 4.6e-228 794.7 480 81.2
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 7.9e-228 793.9 549 73.2
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.0e-227 792.0 477 81.3
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 3.0e-227 792.0 550 73.3
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.7e-225 786.2 550 72.2
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 3.1e-224 781.9 479 78.1
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 4.1e-224 781.6 548 73.4
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.5e-223 779.6 549 72.7
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 3.4e-223 778.5 478 78.2
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 2.2e-222 775.8 480 79.0
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 6.5e-222 774.2 479 79.5
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 3.2e-221 771.9 481 79.0
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 5.5e-221 771.2 479 77.2
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 9.4e-221 770.4 456 82.5
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.6e-220 769.6 549 71.0
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 2.7e-220 768.8 479 78.1
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 3.6e-220 768.5 479 77.5
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 3.6e-220 768.5 480 78.3
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.8e-219 766.1 478 78.7
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 1.5e-218 763.1 478 76.8
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 2.0e-218 762.7 480 77.3
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.7e-218 761.1 518 73.7
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 7.4e-218 760.8 456 80.7
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 9.7e-218 760.4 513 74.5
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 3.7e-217 758.4 480 75.8
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 1.4e-216 756.5 478 78.0
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.4e-216 755.7 477 77.1
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 2.4e-216 755.7 479 78.1
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 7.0e-216 754.2 513 74.1
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 4.5e-215 751.5 478 77.6
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.3e-214 750.0 482 75.5
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 1.7e-214 749.6 478 77.4
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 3.8e-214 748.4 478 76.6
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 6.5e-214 747.7 478 77.2
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 8.5e-214 747.3 481 76.1
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.1e-213 746.9 482 75.3
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 2.5e-213 745.7 478 75.1
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 5.5e-213 744.6 560 67.9
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 1.6e-212 743.0 515 74.2
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.7e-212 742.3 442 83.5
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 2.7e-212 742.3 474 76.4
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 2.7e-212 742.3 474 76.4
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 4.7e-212 741.5 478 76.6
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.4e-211 740.0 481 76.3
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 3.0e-211 738.8 478 76.4
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 5.2e-211 738.0 481 75.7
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 5.2e-211 738.0 406 87.2
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.1e-210 736.9 481 75.9
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 2.0e-210 736.1 481 75.7
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.0e-210 736.1 480 73.1
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 4.4e-210 734.9 479 74.7
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 9.7e-210 733.8 480 73.8
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 8.2e-209 730.7 455 77.4
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 4.1e-208 728.4 474 77.0
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 5.3e-208 728.0 514 71.2
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 4.5e-207 724.9 477 76.1
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.7e-198 696.4 478 74.1
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.2e-196 690.3 469 75.1
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 3.6e-196 688.7 415 79.8
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.3e-193 680.2 402 80.3
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 2.8e-188 662.5 444 74.3
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 4.7e-188 661.8 481 65.9
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.0e-187 660.6 492 69.7
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 4.9e-185 651.7 487 66.9
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 2.1e-180 636.3 478 68.0
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 3.2e-176 622.5 450 68.4
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 6.4e-169 598.2 492 63.4
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 3.7e-161 572.4 455 63.7
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.1e-158 562.0 549 57.7
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 3.6e-156 555.8 513 56.5
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.4e-155 553.9 495 58.2
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 3.9e-150 535.8 386 72.3
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 6.6e-150 535.0 343 78.7
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 6.2e-148 528.5 434 64.3
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 3.8e-145 519.2 466 59.9
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 2.3e-142 510.0 294 86.1
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 3.6e-140 502.7 511 53.8
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 2.5e-133 479.9 349 70.8
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 5.6e-133 478.8 475 51.4
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.5e-130 469.2 389 66.1
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 6.4e-129 465.3 509 49.7
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.2e-106 391.3 306 60.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 7.9e-103 378.6 533 42.4
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 3.0e-102 376.7 518 43.6
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 3.5e-82 310.1 251 67.3
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 4.7e-71 273.1 156 89.7
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 2.4e-67 260.8 244 59.0
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 3.7e-60 236.9 463 33.9
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.8e-55 220.7 174 65.5
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 3.6e-47 193.7 527 31.1
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 8.1e-47 192.6 418 32.3
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 2.3e-46 191.0 111 85.6
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 3.4e-45 187.2 98 86.7
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 4.4e-45 186.8 91 94.5
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 5.8e-45 186.4 354 37.6
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 9.2e-43 179.1 155 62.6
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 3.0e-41 174.1 164 55.5
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 5.1e-41 173.3 118 72.0
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.2e-39 168.7 411 31.4
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 4.8e-31 140.2 163 61.3
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 6.4e-28 129.8 148 54.1
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 1.9e-24 118.2 86 62.8
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 4.0e-22 110.5 162 42.6
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.1e-15 88.2 40 100.0
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 3.4e-13 80.9 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 5.8e-13 80.1 45 80.0
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.3e-09 68.9 32 93.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 2.3e-09 68.2 33 84.8
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 1.6e-07 62.0 109 40.4
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 1.8e-06 58.5 291 23.4
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 3.1e-06 57.8 247 23.9
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 3.1e-06 57.8 247 23.9
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 3.1e-06 57.8 57 52.6
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 6.9e-06 56.6 247 22.7
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 9.0e-06 56.2 247 23.1
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 9.0e-06 56.2 246 22.8
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 9.0e-06 56.2 247 23.5
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 9.0e-06 56.2 246 22.8


User provided reference genes

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