Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 4.9e-210 734.2 365 100.0
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 2.0e-203 712.2 365 97.3
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 4.8e-197 691.0 365 94.8
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 6.8e-135 484.6 367 70.0
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 9.9e-126 454.1 358 69.3
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.9e-124 449.9 369 63.4
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.3e-120 437.2 367 64.3
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 6.4e-117 424.9 370 60.5
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.1e-116 424.1 364 61.3
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.1e-116 424.1 364 60.7
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.7e-114 416.8 362 62.7
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 3.9e-114 415.6 372 58.9
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 2.5e-113 412.9 369 60.2
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.6e-113 411.8 374 59.9
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 7.3e-113 411.4 371 59.0
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.8e-112 408.7 367 60.8
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.1e-111 407.5 370 58.6
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.1e-111 407.5 381 58.3
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.1e-111 407.5 381 58.3
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 1.4e-111 407.1 361 59.8
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 3.1e-111 406.0 382 57.3
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 9.0e-111 404.4 382 57.3
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.5e-110 403.7 366 61.2
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 3.4e-110 402.5 364 61.0
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 3.4e-110 402.5 367 59.1
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 9.9e-110 401.0 364 59.9
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 9.9e-110 401.0 364 59.9
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 2.9e-109 399.4 355 59.7
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 8.4e-109 397.9 363 58.4
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 2.4e-108 396.4 368 59.0
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.7e-107 392.9 367 58.3
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.7e-107 392.9 367 58.3
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 2.7e-107 392.9 361 57.3
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.3e-106 389.8 368 57.6
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 2.5e-105 386.3 356 59.3
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.3e-104 384.0 355 58.6
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.1e-104 383.3 371 56.1
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.4e-103 379.8 397 53.9
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.4e-103 379.8 397 53.9
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.6e-102 376.3 366 55.7
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 3.4e-102 375.9 366 55.7
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 4.5e-102 375.6 370 54.3
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.0e-101 374.4 398 53.5
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.9e-100 370.2 364 54.9
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 9.3e-100 367.9 367 54.5
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 6.0e-99 365.2 329 56.8
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 5.1e-98 362.1 369 53.1
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 8.7e-98 361.3 361 53.5
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 7.4e-97 358.2 362 54.1
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 7.4e-97 358.2 365 54.0
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.3e-96 357.5 369 54.7
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.6e-96 357.1 365 53.7
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 1.6e-96 357.1 354 53.1
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.6e-96 357.1 367 53.1
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 3.7e-96 355.9 364 53.6
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 8.2e-96 354.8 361 53.2
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.4e-95 354.0 363 52.6
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.8e-95 353.6 368 53.3
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 9.0e-95 351.3 359 52.4
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.0e-93 347.8 362 52.2
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 2.9e-93 346.3 378 51.3
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 5.0e-93 345.5 322 56.8
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 6.5e-93 345.1 357 51.5
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 8.4e-93 344.7 357 52.9
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.4e-92 344.0 360 52.2
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.4e-92 344.0 354 50.6
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.9e-92 343.6 334 56.6
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 4.2e-92 342.4 354 50.0
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.6e-91 340.5 374 51.6
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.6e-91 340.5 358 54.5
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.1e-91 340.1 354 50.6
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.7e-91 339.7 360 52.2
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 4.6e-91 339.0 369 50.7
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.0e-90 337.8 354 50.3
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 1.0e-90 337.8 355 51.8
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.3e-90 337.4 356 52.0
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.8e-90 337.0 361 51.8
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.8e-90 337.0 360 51.9
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.1e-89 334.3 324 55.6
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.1e-89 334.3 361 51.5
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 2.5e-89 333.2 358 51.7
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 9.7e-89 331.3 362 51.7
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 9.7e-89 331.3 359 51.0
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 9.7e-89 331.3 290 58.6
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.3e-88 330.9 373 48.8
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.6e-88 330.5 365 51.2
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 3.7e-88 329.3 365 50.1
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 4.8e-88 328.9 360 50.8
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 4.8e-88 328.9 356 52.2
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 6.3e-88 328.6 363 48.2
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 8.2e-88 328.2 359 50.7
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.4e-87 327.4 291 60.1
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 2.4e-87 326.6 357 52.1
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.4e-87 326.6 363 51.8
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 3.1e-87 326.2 365 50.7
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.0e-86 323.6 292 54.8
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 2.6e-86 323.2 362 50.3
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 2.6e-86 323.2 366 51.1
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.5e-86 322.4 271 58.3
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 5.9e-86 322.0 362 49.4
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.3e-85 320.9 363 51.0
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.7e-85 320.5 361 50.7
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.8e-85 319.3 364 47.0
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 5.0e-85 318.9 360 50.3
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 6.5e-85 318.5 363 49.3
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 6.5e-85 318.5 356 50.3
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 1.1e-84 317.8 302 54.6
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.9e-84 317.0 360 50.8
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 5.5e-84 315.5 355 51.8
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 1.2e-83 314.3 270 58.1
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.8e-82 310.5 366 50.0
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 6.7e-82 308.5 360 48.9
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.5e-81 307.4 354 48.3
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 4.3e-81 305.8 374 47.3
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 9.7e-81 304.7 360 46.9
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.7e-80 303.9 374 46.5
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 8.2e-80 301.6 272 55.9
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 8.2e-80 301.6 360 46.4
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.5e-78 295.8 406 45.6
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.9e-76 290.4 318 51.9
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 9.4e-76 288.1 371 45.3
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.6e-75 287.3 268 55.2
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.1e-73 281.2 279 52.3
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 3.3e-73 279.6 309 49.8
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 7.4e-73 278.5 340 46.8
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 9.7e-73 278.1 269 56.9
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 1.1e-71 274.6 322 47.5
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.4e-71 274.2 227 60.4
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 9.1e-71 271.6 317 51.1
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.6e-70 270.8 269 55.0
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.7e-69 267.3 366 45.9
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.2e-69 266.9 272 51.1
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 2.2e-69 266.9 272 51.1
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.5e-68 264.2 272 50.7
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.4e-66 257.7 315 49.2
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.1e-65 254.6 370 43.0
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 7.5e-65 251.9 317 48.6
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 6.3e-64 248.8 286 48.3
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-62 243.8 228 53.9
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 4.0e-58 229.6 316 44.6
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 6.8e-58 228.8 287 46.0
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.8e-58 228.4 355 40.6
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.5e-57 227.6 215 55.8
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.6e-57 226.9 316 39.9
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 3.1e-55 219.9 323 43.3
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.7e-53 214.2 269 46.8
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 9.4e-52 208.4 322 40.4
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 8.0e-51 205.3 324 40.7
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.8e-50 204.1 243 45.3
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.6e-46 191.0 206 54.9
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.5e-44 183.7 183 56.8
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.4e-42 177.9 255 40.0
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 2.6e-41 173.7 215 45.6
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.1e-39 168.3 450 30.0
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 2.0e-38 164.1 194 46.9
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 4.6e-38 162.9 115 60.9
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.9e-36 157.5 167 56.3
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.3e-32 144.8 290 33.8
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.7e-32 144.4 153 55.6
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.6e-30 137.9 286 32.5
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.5e-30 136.7 161 50.3
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 7.3e-28 129.0 211 39.8
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.3e-26 124.0 151 45.0
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 6.4e-24 115.9 150 44.0
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 2.4e-23 114.0 112 49.1
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.6e-22 111.3 85 54.1
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.5e-22 110.2 102 60.8
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 8.9e-18 95.5 141 41.1
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 2.6e-17 94.0 312 27.9
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 7.6e-17 92.4 86 57.0
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.4e-15 88.2 78 55.1
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.9e-15 87.8 132 34.8
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.2e-14 85.1 132 34.1
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 1.6e-14 84.7 120 39.2
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 4.6e-14 83.2 166 33.7
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.3e-13 81.6 106 40.6
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 2.3e-13 80.9 44 81.8
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 1.4e-10 71.6 55 56.4
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 5.2e-10 69.7 56 53.6
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 6.4e-08 62.8 47 63.8
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 8.4e-08 62.4 52 53.8
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.2e-07 60.1 127 37.8
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 9.3e-07 58.9 45 64.4


User provided reference genes

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