Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 2.7e-102 375.6 222 100.0
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 2.7e-102 375.6 222 100.0
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.3e-83 313.5 222 82.0
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 4.2e-79 298.5 222 83.8
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 4.5e-73 278.5 173 79.8
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 2.9e-72 275.8 171 80.7
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 6.5e-72 274.6 175 77.7
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 6.5e-72 274.6 172 79.7
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 1.9e-71 273.1 203 73.9
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 7.2e-71 271.2 201 69.7
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 9.4e-71 270.8 174 75.3
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 9.4e-71 270.8 175 77.1
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 1.2e-70 270.4 170 81.2
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 1.6e-70 270.0 175 77.7
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 2.1e-70 269.6 171 78.4
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 4.7e-70 268.5 171 78.4
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 3.0e-69 265.8 175 74.9
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 3.0e-69 265.8 175 75.4
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 4.0e-69 265.4 202 77.2
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 6.8e-69 264.6 177 74.6
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 6.8e-69 264.6 177 74.6
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 6.8e-69 264.6 201 74.6
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 8.8e-69 264.2 192 71.4
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 1.2e-68 263.8 175 74.9
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 1.5e-68 263.5 175 75.4
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.5e-68 263.5 175 74.3
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 1.5e-68 263.5 175 74.3
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 5.7e-68 261.5 175 75.4
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 1.3e-67 260.4 175 73.1
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 1.7e-67 260.0 175 73.7
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 2.2e-67 259.6 175 74.9
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 6.3e-67 258.1 173 76.9
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 1.1e-66 257.3 175 73.7
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 1.4e-66 256.9 203 72.9
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 5.4e-66 255.0 181 73.5
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 5.4e-66 255.0 175 71.4
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 5.4e-66 255.0 144 86.1
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 7.0e-66 254.6 210 70.5
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 7.0e-66 254.6 175 73.7
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 7.0e-66 254.6 173 72.8
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 1.2e-65 253.8 207 70.5
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 1.6e-65 253.4 202 73.8
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 1.6e-65 253.4 178 74.2
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 1.6e-65 253.4 180 73.3
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 2.7e-65 252.7 151 80.8
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.7e-65 252.7 175 72.6
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 3.5e-65 252.3 177 72.9
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 5.9e-65 251.5 175 76.0
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 1.0e-64 250.8 201 75.1
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 1.3e-64 250.4 134 91.0
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 2.2e-64 249.6 180 71.7
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.1e-63 247.3 207 71.5
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 4.2e-63 245.4 172 73.3
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 5.5e-63 245.0 175 71.4
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 5.5e-63 245.0 176 71.0
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 5.5e-63 245.0 176 73.3
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 7.2e-63 244.6 154 76.0
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 1.6e-62 243.4 175 69.7
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 1.6e-62 243.4 163 75.5
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 2.1e-62 243.0 130 90.0
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 2.7e-62 242.7 161 75.8
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 4.7e-62 241.9 176 71.0
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 4.7e-62 241.9 161 72.0
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 8.0e-62 241.1 175 71.4
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 8.0e-62 241.1 172 72.7
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 1.0e-61 240.7 151 80.1
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 1.4e-61 240.4 157 73.9
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 3.0e-61 239.2 164 73.8
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 5.2e-61 238.4 181 66.3
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 5.2e-61 238.4 181 64.6
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 8.8e-61 237.7 181 66.3
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 2.0e-60 236.5 147 75.5
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 2.0e-60 236.5 147 75.5
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 2.6e-60 236.1 181 64.6
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 4.4e-60 235.3 179 67.6
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 5.7e-60 235.0 181 62.4
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 5.7e-60 235.0 181 62.4
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 1.7e-59 233.4 147 78.2
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 2.8e-59 232.6 158 73.4
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 3.7e-59 232.3 181 64.1
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 1.1e-58 230.7 154 74.7
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 4.1e-58 228.8 134 80.6
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 4.1e-58 228.8 133 82.7
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 7.0e-58 228.0 229 63.3
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 1.2e-57 227.3 132 82.6
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 2.0e-57 226.5 239 53.6
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 1.3e-56 223.8 202 62.4
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 3.6e-54 215.7 154 69.5
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 6.8e-53 211.5 184 59.8
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 4.1e-50 202.2 178 79.8
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 5.6e-47 191.8 140 67.9
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 1.2e-44 184.1 140 62.9
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 1.3e-43 180.6 183 54.6
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 1.7e-43 180.3 188 53.7
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 1.7e-40 170.2 91 86.8
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 6.6e-40 168.3 182 52.2
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 8.1e-38 161.4 136 67.6
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 2.3e-37 159.8 172 54.7
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 2.6e-36 156.4 131 62.6
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 1.4e-34 150.6 153 52.9
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 1.2e-28 131.0 131 54.2
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 2.0e-28 130.2 114 69.3
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 2.0e-28 130.2 114 69.3
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 2.2e-27 126.7 147 48.3
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 2.5e-23 113.2 96 64.6
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.1e-21 107.8 80 76.2
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.4e-21 107.5 95 66.3
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 9.3e-18 94.7 78 65.4
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.6e-17 94.0 108 44.4
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 4.3e-15 85.9 55 76.4
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 3.2e-10 69.7 37 91.9
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 6.0e-09 65.5 31 80.6
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 3.9e-08 62.8 59 54.2
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 5.1e-08 62.4 31 77.4
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 2.5e-07 60.1 110 45.5


User provided reference genes

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