Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 4.0e-188 661.4 357 100.0
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 4.1e-132 475.3 352 69.0
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 1.7e-122 443.4 352 66.2
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 5.7e-118 428.3 305 68.5
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 1.3e-114 417.2 352 61.1
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 2.9e-114 416.0 351 61.0
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 6.5e-114 414.8 354 62.4
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 6.5e-114 414.8 350 59.7
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 1.2e-112 410.6 349 61.0
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 2.1e-112 409.8 347 60.8
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 5.2e-111 405.2 358 58.7
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 8.8e-111 404.4 352 58.5
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 4.4e-110 402.1 352 58.2
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.8e-109 399.4 352 58.8
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 6.3e-109 398.3 352 59.7
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 1.4e-108 397.1 354 57.1
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 3.1e-108 396.0 358 57.5
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 3.1e-108 396.0 354 59.9
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 7.0e-108 394.8 352 56.8
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 2.6e-107 392.9 353 58.6
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 7.7e-107 391.3 350 57.4
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.3e-106 390.6 352 57.4
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 2.9e-106 389.4 351 58.7
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 8.5e-106 387.9 341 58.1
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.1e-105 387.5 350 57.1
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.5e-105 387.1 350 56.9
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 1.9e-105 386.7 352 54.8
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 2.5e-105 386.3 359 57.1
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 3.2e-105 386.0 352 56.5
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 1.2e-104 384.0 354 57.9
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 3.6e-104 382.5 356 57.0
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 1.4e-103 380.6 354 56.5
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 5.2e-103 378.6 346 55.5
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 6.7e-103 378.3 352 56.2
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 8.8e-103 377.9 346 56.4
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 1.2e-102 377.5 348 56.9
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 1.5e-102 377.1 350 56.9
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 1.5e-102 377.1 346 56.4
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 1.5e-102 377.1 346 56.4
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 4.4e-102 375.6 352 56.2
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.7e-101 373.6 357 56.6
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 1.7e-101 373.6 352 56.2
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 8.2e-101 371.3 305 60.3
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.1e-100 370.9 350 55.7
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.1e-100 370.9 352 54.5
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.4e-100 370.5 279 65.6
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 3.1e-100 369.4 357 54.6
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 3.1e-100 369.4 348 56.3
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 7.7e-99 364.8 353 56.1
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 1.0e-98 364.4 306 58.8
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 2.2e-98 363.2 311 58.8
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 3.8e-98 362.5 304 58.9
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 8.5e-98 361.3 304 57.9
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 1.5e-97 360.5 357 53.8
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 4.0e-95 352.4 354 54.2
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 5.2e-95 352.1 362 50.3
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 8.8e-95 351.3 355 51.0
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 1.2e-94 350.9 351 52.7
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 2.0e-94 350.1 358 53.9
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 4.4e-94 349.0 341 52.8
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 4.4e-94 349.0 356 52.2
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 4.4e-94 349.0 353 50.4
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 9.8e-94 347.8 303 53.8
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 9.8e-94 347.8 377 54.6
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 1.3e-93 347.4 357 51.5
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 2.2e-93 346.7 370 52.4
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 2.8e-93 346.3 348 51.4
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 1.1e-92 344.4 307 55.7
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 1.4e-92 344.0 355 50.4
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 5.4e-92 342.0 348 50.6
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 9.1e-92 341.3 376 52.7
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 2.7e-91 339.7 358 50.0
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 2.9e-90 336.3 371 50.1
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 3.8e-90 335.9 399 46.4
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 1.5e-89 334.0 320 53.1
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 1.9e-89 333.6 382 51.3
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 2.5e-89 333.2 365 52.9
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 5.5e-89 332.0 339 50.1
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 1.6e-88 330.5 309 52.8
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 2.1e-88 330.1 339 50.7
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 2.8e-88 329.7 310 55.2
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 3.6e-88 329.3 358 48.3
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 1.4e-87 327.4 362 49.2
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 1.8e-87 327.0 340 51.2
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 2.3e-87 326.6 355 49.3
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 4.0e-87 325.9 340 50.9
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 6.8e-87 325.1 311 57.2
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 8.8e-87 324.7 297 54.9
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 1.2e-86 324.3 297 54.5
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 1.5e-86 323.9 297 54.5
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 4.4e-86 322.4 366 51.6
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 5.7e-86 322.0 309 53.1
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 5.7e-86 322.0 275 62.2
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 1.7e-85 320.5 319 53.9
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 1.7e-85 320.5 306 52.6
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 8.3e-85 318.2 400 46.8
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 2.0e-83 313.5 340 48.5
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 2.5e-81 306.6 309 51.1
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 3.7e-77 292.7 329 49.8
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 3.6e-64 249.6 217 54.4
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 2.3e-63 246.9 294 46.9
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 6.6e-58 228.8 193 57.5
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 1.4e-52 211.1 178 59.0
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 2.7e-51 206.8 303 41.3
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 2.8e-48 196.8 303 40.3
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 2.4e-47 193.7 244 41.4
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 4.4e-46 189.5 302 37.7
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 1.7e-45 187.6 303 36.3
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 5.1e-42 176.0 198 43.4
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 6.9e-39 165.6 231 42.9
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.0e-38 164.1 220 42.7
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.5e-38 162.9 205 43.4
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.4e-37 159.1 206 41.3
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.4e-36 157.9 206 40.8
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 2.4e-36 157.1 204 42.2
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.2e-36 156.8 219 40.6
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 2.7e-35 153.7 225 39.6
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.0e-35 152.5 204 37.7
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 8.7e-34 148.7 202 39.1
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.9e-31 139.0 329 31.6
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.9e-28 131.0 120 55.0
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 1.9e-25 120.9 117 54.7
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.4e-23 114.0 85 61.2
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 3.4e-22 110.2 162 35.8
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 5.1e-18 96.3 113 46.0
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 4.3e-09 66.6 72 44.4


User provided reference genes

Program Settings