Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 6.5e-54 213.8 106 100.0
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 4.7e-44 181.0 106 82.1
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 9.8e-42 173.3 106 79.2
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.6e-39 166.0 107 76.6
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 4.3e-37 157.9 106 70.8
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 7.3e-37 157.1 107 72.0
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 9.5e-37 156.8 106 69.8
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.2e-36 156.4 107 70.1
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 2.1e-36 155.6 106 72.6
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 2.8e-36 155.2 106 65.1
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 2.8e-36 155.2 107 69.2
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 4.7e-36 154.5 106 67.9
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 4.7e-36 154.5 106 67.9
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 8.0e-36 153.7 106 65.1
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.0e-35 153.3 106 67.0
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.0e-35 153.3 106 70.8
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.0e-35 153.3 106 68.9
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 1.8e-35 152.5 106 68.9
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 2.3e-35 152.1 107 68.2
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.3e-35 152.1 106 67.9
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 2.3e-35 152.1 106 64.2
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.0e-35 151.4 107 67.3
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 8.9e-35 150.2 106 70.8
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 1.2e-34 149.8 106 67.9
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.2e-34 149.8 106 67.0
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.6e-34 148.7 107 65.4
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 2.6e-34 148.7 106 67.0
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 3.4e-34 148.3 107 66.4
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.4e-34 148.3 106 67.0
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 4.4e-34 147.9 107 66.4
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 4.4e-34 147.9 106 65.1
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 1.7e-33 146.0 106 65.1
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 2.2e-33 145.6 106 64.2
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 2.9e-33 145.2 107 65.4
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 6.4e-33 144.1 107 65.4
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.1e-32 143.3 106 64.2
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 1.4e-32 142.9 106 65.1
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.4e-32 142.9 106 64.2
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.4e-32 142.9 106 63.2
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 1.8e-32 142.5 107 64.5
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.8e-32 142.5 106 60.4
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.8e-32 142.5 107 63.6
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.8e-32 142.5 106 61.3
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.8e-32 142.5 106 64.2
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.4e-32 142.1 106 63.2
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 2.4e-32 142.1 106 61.3
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.4e-32 142.1 106 63.2
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 2.4e-32 142.1 103 65.0
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.4e-32 142.1 106 64.2
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.2e-32 141.7 106 62.3
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 4.1e-32 141.4 106 59.4
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 5.4e-32 141.0 106 61.3
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 5.4e-32 141.0 106 61.3
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 7.0e-32 140.6 107 69.2
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 9.2e-32 140.2 107 62.6
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 9.2e-32 140.2 106 59.4
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 9.2e-32 140.2 106 61.3
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 1.2e-31 139.8 106 62.3
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.2e-31 139.8 106 63.2
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.2e-31 139.8 106 63.2
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 1.2e-31 139.8 106 62.3
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.2e-31 139.8 107 60.7
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.6e-31 139.4 106 62.3
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.6e-31 139.4 106 62.3
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.6e-31 139.4 106 62.3
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 1.6e-31 139.4 106 62.3
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 1.6e-31 139.4 107 60.7
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 2.0e-31 139.0 106 60.4
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 2.0e-31 139.0 107 68.2
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 3.5e-31 138.3 106 65.1
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 4.6e-31 137.9 106 62.3
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 5.9e-31 137.5 107 64.5
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 5.9e-31 137.5 107 63.6
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 5.9e-31 137.5 107 61.7
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 5.9e-31 137.5 107 64.5
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 7.8e-31 137.1 107 62.6
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 7.8e-31 137.1 107 60.7
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.0e-30 136.7 107 62.6
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 2.3e-30 135.6 107 67.3
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.3e-30 135.6 106 59.4
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 2.3e-30 135.6 107 66.4
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 3.0e-30 135.2 106 61.3
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 3.0e-30 135.2 106 57.5
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 3.0e-30 135.2 107 66.4
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 3.9e-30 134.8 106 59.4
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 5.0e-30 134.4 107 64.5
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 5.0e-30 134.4 106 61.3
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 5.0e-30 134.4 106 57.5
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 6.6e-30 134.0 107 64.5
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 6.6e-30 134.0 106 60.4
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.1e-29 133.3 107 62.6
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.1e-29 133.3 106 57.5
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.1e-29 133.3 107 57.9
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 60.2
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 3.3e-29 131.7 107 60.7
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 4.3e-29 131.3 106 58.5
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 9.5e-29 130.2 107 64.5
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.2e-28 129.8 108 58.3
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.2e-28 129.8 106 59.4
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 1.2e-28 129.8 107 60.7
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.6e-28 129.4 107 60.7
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 2.8e-28 128.6 102 56.9
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 2.8e-28 128.6 106 60.4
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 3.6e-28 128.3 107 57.0
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 3.6e-28 128.3 107 57.0
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 4.7e-28 127.9 106 57.5
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 4.7e-28 127.9 106 59.4
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 8.0e-28 127.1 99 62.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.8e-27 125.9 98 62.2
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 5.2e-27 124.4 106 53.8
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 8.9e-27 123.6 95 62.1
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 2.2e-25 119.0 110 54.5
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 2.2e-25 119.0 107 51.4
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 2.2e-25 119.0 85 67.1
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 4.9e-25 117.9 85 67.1
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 6.4e-25 117.5 88 63.6
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.4e-24 115.5 88 63.6
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 3.2e-24 115.2 106 50.0
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 3.2e-24 115.2 88 62.5
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 5.4e-24 114.4 89 60.7
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 9.2e-24 113.6 91 59.3
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 9.2e-24 113.6 84 64.3
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 1.6e-23 112.8 88 62.5
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 2.0e-23 112.5 93 59.1
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.7e-23 112.1 84 64.3
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 3.5e-23 111.7 106 48.1
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 3.5e-23 111.7 85 64.7
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 4.6e-23 111.3 85 64.7
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 4.6e-23 111.3 85 64.7
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 6.0e-23 110.9 106 52.8
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 7.8e-23 110.5 106 55.7
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 1.0e-22 110.2 106 49.1
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.7e-22 109.4 88 58.0
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.3e-22 109.0 94 56.4
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 6.6e-22 107.5 86 60.5
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 6.6e-22 107.5 106 47.2
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 3.3e-21 105.1 86 59.3
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 4.3e-21 104.8 88 58.0
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 6.8e-19 97.4 108 45.4
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 8.9e-19 97.1 108 45.4
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 2.0e-18 95.9 94 52.1
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 4.4e-18 94.7 87 52.9
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 1.7e-17 92.8 67 59.7
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 3.7e-17 91.7 93 51.6
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 6.4e-17 90.9 87 52.9
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 7.1e-16 87.4 107 43.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 2.7e-15 85.5 85 48.2
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 3.0e-14 82.0 65 58.5
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 5.1e-14 81.3 84 50.0
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 1.1e-13 80.1 105 35.2
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 3.3e-13 78.6 87 50.6
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 6.8e-11 70.9 58 58.6
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 2.0e-10 69.3 110 38.2
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 4.4e-10 68.2 65 52.3
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 9.9e-10 67.0 79 44.3
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 1.7e-09 66.2 108 36.1
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 1.4e-08 63.2 109 36.7
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 5.1e-06 54.7 64 42.2
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 5.1e-06 54.7 64 42.2


User provided reference genes

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