Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 2.0e-68 262.3 130 100.0
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 1.7e-56 222.6 122 91.8
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 2.4e-50 202.2 117 87.2
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 7.0e-50 200.7 121 81.8
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 1.7e-48 196.1 121 81.0
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.7e-48 196.1 121 80.2
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 1.7e-48 196.1 121 80.2
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.5e-47 193.0 117 80.3
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.9e-47 192.6 117 80.3
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.5e-47 192.2 117 80.3
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.2e-46 189.9 117 81.2
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 3.6e-46 188.3 121 75.2
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 3.6e-46 188.3 119 79.0
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 3.6e-46 188.3 121 77.7
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 4.7e-46 188.0 117 78.6
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 6.1e-46 187.6 121 76.9
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 8.0e-46 187.2 117 79.5
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.0e-45 186.8 121 75.2
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.0e-45 186.8 117 78.6
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.4e-45 186.4 117 79.5
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 1.8e-45 186.0 117 78.6
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 5.2e-45 184.5 117 76.9
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 6.8e-45 184.1 121 77.7
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.2e-44 183.3 119 77.3
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 1.5e-44 183.0 121 74.4
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.0e-44 182.6 121 76.0
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 2.0e-44 182.6 121 76.0
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 3.4e-44 181.8 121 75.2
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 5.8e-44 181.0 121 75.2
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.8e-44 181.0 121 75.2
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.8e-44 181.0 121 75.2
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 5.8e-44 181.0 121 75.2
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 7.5e-44 180.6 119 76.5
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 9.8e-44 180.3 116 78.4
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.7e-43 179.5 122 73.0
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.2e-43 179.1 121 74.4
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 3.7e-43 178.3 116 75.9
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 3.7e-43 178.3 121 74.4
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.4e-42 176.4 116 75.9
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.4e-42 176.4 116 74.1
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.4e-42 176.4 121 71.1
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.9e-42 176.0 116 76.7
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 3.2e-42 175.3 116 75.9
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 4.1e-42 174.9 116 75.0
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 4.1e-42 174.9 116 74.1
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 5.4e-42 174.5 116 75.9
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 7.0e-42 174.1 117 73.5
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 7.0e-42 174.1 112 77.7
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 4.6e-41 171.4 116 74.1
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 6.0e-41 171.0 117 72.6
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 6.0e-41 171.0 117 72.6
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.0e-40 170.2 116 76.7
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.0e-40 170.2 117 72.6
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.0e-40 170.2 117 73.5
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.3e-40 169.9 116 73.3
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.3e-40 169.9 121 68.6
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.7e-40 169.5 116 70.7
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 1.7e-40 169.5 117 71.8
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.7e-40 169.5 117 74.4
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 2.3e-40 169.1 121 67.8
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 3.0e-40 168.7 116 73.3
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 3.9e-40 168.3 122 71.3
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 5.0e-40 167.9 116 74.1
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 6.6e-40 167.5 116 72.4
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 6.6e-40 167.5 117 70.9
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 6.6e-40 167.5 117 70.9
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 6.6e-40 167.5 117 70.9
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 6.6e-40 167.5 116 71.6
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 8.6e-40 167.2 145 62.8
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.5e-39 166.4 116 72.4
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 2.5e-39 165.6 116 70.7
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.5e-39 165.6 118 70.3
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 2.5e-39 165.6 116 69.8
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 2.5e-39 165.6 116 70.7
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 3.3e-39 165.2 116 75.0
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 3.3e-39 165.2 116 73.3
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 4.3e-39 164.9 112 71.4
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.3e-39 164.9 118 69.5
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 4.3e-39 164.9 116 70.7
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 1.2e-38 163.3 121 70.2
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 2.8e-38 162.2 117 69.2
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 6.2e-38 161.0 121 68.6
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 6.2e-38 161.0 118 68.6
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 6.2e-38 161.0 116 69.0
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.1e-37 160.2 91 89.0
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.4e-37 159.8 117 69.2
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.0e-36 156.0 116 62.9
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 5.8e-36 154.5 116 60.3
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.4e-34 149.8 121 63.6
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.9e-34 149.4 99 74.7
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.2e-33 146.7 89 78.7
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 6.6e-32 141.0 115 63.5
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 6.6e-32 141.0 115 59.1
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 6.6e-32 141.0 115 59.1
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 8.6e-32 140.6 90 76.7
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.1e-31 140.2 116 60.3
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.9e-31 139.4 116 60.3
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 2.5e-31 139.0 116 59.5
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.2e-30 136.7 142 52.8
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 3.6e-30 135.2 116 59.5
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 3.6e-30 135.2 116 59.5
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.6e-30 135.2 114 62.3
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.4e-29 133.3 117 58.1
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.1e-29 132.1 117 56.4
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.0e-29 131.7 89 69.7
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.0e-29 131.7 117 55.6
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.9e-29 130.6 117 56.4
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 1.2e-28 130.2 115 63.5
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.5e-28 129.8 89 67.4
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.0e-28 129.4 129 54.3
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 3.4e-28 128.6 116 56.0
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 4.4e-28 128.3 116 56.0
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 5.8e-28 127.9 116 55.2
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 5.8e-28 127.9 116 55.2
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 3.7e-27 125.2 67 91.0
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 4.9e-27 124.8 116 55.2
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 6.4e-27 124.4 89 67.4
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.1e-26 123.6 101 57.4
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.1e-26 123.6 116 52.6
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.9e-26 122.9 88 67.0
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 4.1e-26 121.7 116 53.4
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 5.4e-26 121.3 88 64.8
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 2.7e-25 119.0 116 50.0
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 1.0e-24 117.1 88 61.4
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 3.0e-24 115.5 90 64.4
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.3e-19 100.1 70 68.6
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.3e-19 100.1 76 59.2
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.4e-19 97.8 112 49.1
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 4.2e-18 95.1 75 68.0
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.1e-17 92.8 99 51.5
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 7.8e-17 90.9 120 41.7
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 3.0e-16 89.0 115 43.5
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 8.7e-16 87.4 115 40.9
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 1.6e-14 83.2 54 74.1
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.6e-14 82.0 88 52.3
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 6.2e-14 81.3 73 57.5
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 6.9e-13 77.8 72 50.0
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.8e-12 74.7 93 48.4
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 8.4e-11 70.9 97 40.2
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.4e-10 70.1 48 75.0
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.9e-10 69.7 59 57.6
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 9.3e-10 67.4 58 56.9
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 9.3e-10 67.4 66 57.6
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 6.6e-08 61.2 82 41.5
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 7.3e-07 57.8 44 72.7
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 8.1e-06 54.3 37 73.0


User provided reference genes

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