Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 1.4e-57 226.1 116 100.0
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 1.4e-33 146.4 83 96.4
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 9.4e-14 80.5 72 56.9
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 8.0e-13 77.4 69 62.3
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 1.8e-12 76.3 80 58.8
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 3.0e-12 75.5 72 55.6
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 8.8e-12 73.9 75 53.3
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.2e-11 73.6 75 54.7
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.2e-11 73.6 73 60.3
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.5e-11 73.2 60 66.7
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.5e-11 73.2 75 54.7
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 3.4e-11 72.0 75 58.7
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 3.4e-11 72.0 66 54.5
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 3.4e-11 72.0 66 54.5
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 3.4e-11 72.0 62 66.1
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 5.7e-11 71.2 59 64.4
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 5.7e-11 71.2 59 64.4
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 5.7e-11 71.2 49 69.4
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 5.7e-11 71.2 53 64.2
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 5.7e-11 71.2 53 69.8
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 9.8e-11 70.5 73 54.8
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.3e-10 70.1 76 53.9
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 1.3e-10 70.1 125 43.2
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.7e-10 69.7 83 51.8
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 1.7e-10 69.7 46 67.4
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 1.7e-10 69.7 46 67.4
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.7e-10 69.7 46 69.6
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.7e-10 69.7 73 56.2
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 2.2e-10 69.3 62 58.1
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.2e-10 69.3 76 56.6
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 2.8e-10 68.9 73 56.2
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 2.8e-10 68.9 81 50.6
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 4.8e-10 68.2 69 52.2
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 4.8e-10 68.2 53 60.4
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 8.3e-10 67.4 78 53.8
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 8.3e-10 67.4 73 56.2
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 1.1e-09 67.0 49 63.3
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.1e-09 67.0 67 59.7
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.4e-09 66.6 54 63.0
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 1.4e-09 66.6 49 63.3
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 1.8e-09 66.2 63 57.1
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.8e-09 66.2 54 63.0
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.8e-09 66.2 54 63.0
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.8e-09 66.2 74 51.4
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 3.1e-09 65.5 67 59.7
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 3.1e-09 65.5 74 52.7
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 4.1e-09 65.1 70 52.9
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 4.1e-09 65.1 42 76.2
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.1e-09 65.1 54 63.0
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.1e-09 65.1 54 63.0
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 4.1e-09 65.1 53 58.5
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 4.1e-09 65.1 60 60.0
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 5.4e-09 64.7 75 48.0
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.4e-09 64.7 67 55.2
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 5.4e-09 64.7 71 53.5
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 7.0e-09 64.3 52 57.7
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 7.0e-09 64.3 52 57.7
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 7.0e-09 64.3 67 53.7
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 9.1e-09 63.9 40 65.0
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 9.1e-09 63.9 68 50.0
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.1e-09 63.9 67 55.2
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 9.1e-09 63.9 70 50.0
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.2e-08 63.5 69 55.1
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 1.6e-08 63.2 72 52.8
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 1.6e-08 63.2 78 43.6
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 1.6e-08 63.2 52 57.7
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.6e-08 63.2 73 52.1
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 2.0e-08 62.8 67 49.3
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 2.0e-08 62.8 67 49.3
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 2.0e-08 62.8 67 49.3
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 2.0e-08 62.8 67 49.3
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 2.7e-08 62.4 80 43.8
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 2.7e-08 62.4 49 57.1
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 2.7e-08 62.4 81 45.7
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.7e-08 62.4 54 63.0
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 2.7e-08 62.4 52 55.8
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 2.7e-08 62.4 76 44.7
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 3.5e-08 62.0 80 46.2
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 3.5e-08 62.0 61 57.4
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 3.5e-08 62.0 54 59.3
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 4.5e-08 61.6 77 49.4
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 4.5e-08 61.6 54 63.0
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 4.5e-08 61.6 54 63.0
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 4.5e-08 61.6 77 53.2
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 5.9e-08 61.2 70 52.9
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 5.9e-08 61.2 75 46.7
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 5.9e-08 61.2 69 56.5
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 5.9e-08 61.2 41 65.9
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 7.7e-08 60.8 57 52.6
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 7.7e-08 60.8 42 64.3
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 1.0e-07 60.5 66 54.5
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 1.0e-07 60.5 80 43.8
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 1.0e-07 60.5 52 50.0
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 1.3e-07 60.1 67 47.8
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 1.3e-07 60.1 67 47.8
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 1.3e-07 60.1 67 47.8
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 1.3e-07 60.1 68 55.9
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 1.3e-07 60.1 72 50.0
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 1.7e-07 59.7 64 50.0
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 1.7e-07 59.7 41 61.0
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 2.3e-07 59.3 67 46.3
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 2.9e-07 58.9 67 46.3
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 2.9e-07 58.9 79 46.8
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 2.9e-07 58.9 81 49.4
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 3.8e-07 58.5 68 48.5
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 3.8e-07 58.5 49 59.2
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 3.8e-07 58.5 65 49.2
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 5.0e-07 58.2 70 47.1
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 5.0e-07 58.2 59 50.8
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 8.6e-07 57.4 49 55.1
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 8.6e-07 57.4 49 55.1
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 8.6e-07 57.4 49 55.1
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 8.6e-07 57.4 38 60.5
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.1e-06 57.0 82 43.9
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 2.5e-06 55.8 39 61.5
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 5.5e-06 54.7 52 51.9
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 5.5e-06 54.7 70 48.6
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 7.2e-06 54.3 76 44.7
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 9.5e-06 53.9 49 51.0
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 9.5e-06 53.9 66 56.1


User provided reference genes

Program Settings