Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p044873 Quercus lobata HOM05D007039 ORTHO05D008886 2.3e-142 508.8 245 100.0
CiPaw.14G032800 Carya illinoinensis HOM05D007039 ORTHO05D008886 4.9e-113 411.4 245 80.4
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.6e-111 406.4 245 78.8
Oeu025598.1 Olea europaea HOM05D007039 ORTHO05D008886 1.8e-107 392.9 244 75.8
CANSAT56G1368 Cannabis sativa HOM05D007039 ORTHO05D008886 2.9e-105 385.6 243 74.1
Rhsim09G0142000 Rhododendron simsii HOM05D007039 ORTHO05D008886 8.4e-105 384.0 243 75.3
Dinv11837 Davidia involucrata HOM05D007039 ORTHO05D008886 1.4e-104 383.3 241 75.9
PGSC0003DMG400016998 Solanum tuberosum HOM05D007039 ORTHO05D008886 2.5e-104 382.5 239 76.2
Atru.chr12.1023 Acer truncatum HOM05D007039 ORTHO05D008886 4.2e-104 381.7 243 72.0
Sopen04g004820 Solanum pennellii HOM05D007039 ORTHO05D008886 5.5e-104 381.3 239 75.7
MD02G1261300 Malus domestica HOM05D007039 ORTHO05D008886 1.2e-103 380.2 240 75.0
Prupe.2G067300 Prunus persica HOM05D007039 ORTHO05D008886 1.2e-103 380.2 242 74.8
Cc02_g09650 Coffea canephora HOM05D007039 ORTHO05D008886 2.1e-103 379.4 243 73.3
Solyc04g009700.3 Solanum lycopersicum HOM05D007039 ORTHO05D008886 2.7e-103 379.0 239 74.9
Manes.07G087400 Manihot esculenta HOM05D007039 ORTHO05D008886 7.9e-103 377.5 244 72.5
TWI63G1767 Tripterygium wilfordii HOM05D007039 ORTHO05D008886 1.3e-102 376.7 238 73.9
Oeu036842.1 Olea europaea HOM05D007039 ORTHO05D008886 8.7e-102 374.0 244 72.5
Potri.010G238700 Populus trichocarpa HOM05D007039 ORTHO05D008886 8.7e-102 374.0 241 73.0
CSS0023700 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.1e-101 373.6 244 72.1
arahy.Tifrunner.gnm1.ann1.2NV5LW Arachis hypogaea HOM05D007039 ORTHO05D008886 4.3e-101 371.7 238 73.5
arahy.Tifrunner.gnm1.ann1.XC1RGZ Arachis hypogaea HOM05D007039 ORTHO05D008886 4.3e-101 371.7 238 73.5
CAN.G186.55 Capsicum annuum HOM05D007039 ORTHO05D008886 4.3e-101 371.7 239 73.2
CSS0047124 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 7.4e-101 370.9 240 71.7
GSVIVG01001001001 Vitis vinifera HOM05D007039 ORTHO05D008886 1.3e-100 370.2 245 71.0
Eucgr.J00258 Eucalyptus grandis HOM05D007039 ORTHO05D008886 1.6e-100 369.8 242 70.7
Sabra10G0186900 Salix brachista HOM05D007039 ORTHO05D008886 1.6e-100 369.8 241 71.8
Lalb_Chr06g0166411 Lupinus albus HOM05D007039 ORTHO05D008886 4.8e-100 368.2 241 71.4
Lj2A32T31 Lonicera japonica HOM05D007039 ORTHO05D008886 1.4e-99 366.7 238 72.7
Thecc.07G140700 Theobroma cacao HOM05D007039 ORTHO05D008886 1.4e-99 366.7 241 69.3
HanXRQChr08g0217501 Helianthus annuus HOM05D007039 ORTHO05D008886 1.8e-99 366.3 242 71.5
SalBow6G1307 Salvia bowleyana HOM05D007039 ORTHO05D008886 6.9e-99 364.4 243 70.0
RcHm_v2.0_Chr1g0331721 Rosa chinensis HOM05D007039 ORTHO05D008886 1.2e-98 363.6 245 71.8
FAN03G1588 Fragaria x ananassa HOM05D007039 ORTHO05D008886 2.0e-98 362.8 245 70.6
Lsat_1_v5_gn_8_24101 Lactuca sativa HOM05D007039 ORTHO05D008886 3.4e-98 362.1 242 71.1
FAN01G2006 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.0e-97 360.5 245 71.0
SGA_v2.0_scaffold62G21336 Striga asiatica HOM05D007039 ORTHO05D008886 1.3e-97 360.1 240 70.4
Potri.008G020500 Populus trichocarpa HOM05D007039 ORTHO05D008886 1.7e-97 359.8 238 71.4
Migut.F00878 Erythranthe guttata HOM05D007039 ORTHO05D008886 2.2e-97 359.4 240 70.8
vmacro10308 Vaccinium macrocarpon HOM05D007039 ORTHO05D008886 2.9e-97 359.0 289 62.3
Glyma.20G110700 Glycine max HOM05D007039 ORTHO05D008886 3.8e-97 358.6 241 69.7
Ca_25665_v3 Cicer arietinum L. HOM05D007039 ORTHO05D008886 1.1e-96 357.1 241 71.4
FAN06G3803 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.4e-96 356.7 245 70.2
Lj5g0024269 Lotus japonicus HOM05D007039 ORTHO05D008886 3.2e-96 355.5 236 72.9
TAR623G0720 Trochodendron aralioides HOM05D007039 ORTHO05D008886 9.3e-96 354.0 245 71.0
Ciclev10016452m.g Citrus clementina HOM05D007039 ORTHO05D008886 1.2e-95 353.6 235 69.8
MD07G1059500 Malus domestica HOM05D007039 ORTHO05D008886 2.1e-95 352.8 241 69.7
COL.COLO4_17444 Corchorus olitorius HOM05D007039 ORTHO05D008886 2.7e-95 352.4 241 68.5
Gohir.A06G173100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 2.7e-95 352.4 245 66.5
Gohir.D06G183000 Gossypium hirsutum HOM05D007039 ORTHO05D008886 2.7e-95 352.4 245 66.5
TPR.G2471 Trifolium pratense HOM05D007039 ORTHO05D008886 3.6e-95 352.1 239 69.9
Gorai.010G214000 Gossypium raimondii HOM05D007039 ORTHO05D008886 6.1e-95 351.3 245 66.5
Gohir.D06G182700 Gossypium hirsutum HOM05D007039 ORTHO05D008886 7.9e-95 350.9 245 66.5
Gorai.010G214100 Gossypium raimondii HOM05D007039 ORTHO05D008886 1.0e-94 350.5 245 66.5
THA.LOC104801579 Tarenaya hassleriana HOM05D007039 ORTHO05D008886 1.0e-94 350.5 238 68.5
Medtr1g112080 Medicago truncatula HOM05D007039 ORTHO05D008886 2.3e-94 349.4 239 69.5
Gohir.D06G183100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 3.0e-94 349.0 245 66.5
Phvul.007G022300 Phaseolus vulgaris HOM05D007039 ORTHO05D008886 3.9e-94 348.6 241 68.0
FAN10G1571 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.5e-93 346.7 259 66.8
Nn6g34917 Nelumbo nucifera HOM05D007039 ORTHO05D008886 1.5e-93 346.7 237 71.7
Psat6g231000 Pisum sativum HOM05D007039 ORTHO05D008886 3.3e-93 345.5 239 70.3
VMungo0720G0617 Vigna mungo HOM05D007039 ORTHO05D008886 9.7e-93 344.0 241 67.2
Sc20g0001160 Simmondsia chinensis HOM05D007039 ORTHO05D008886 4.8e-92 341.7 245 66.9
unitig_748.g8774 Utricularia gibba HOM05D007039 ORTHO05D008886 6.3e-92 341.3 244 66.4
Duzib106G1061 Durio zibethinus HOM05D007039 ORTHO05D008886 8.2e-92 340.9 243 65.0
Nitab4.5_0003927g0060 Nicotiana tabacum HOM05D007039 ORTHO05D008886 4.1e-91 338.6 242 69.4
Hund22275 Selenicereus undatus HOM05D007039 ORTHO05D008886 1.5e-90 336.7 240 67.1
MELO3C019894.2 Cucumis melo HOM05D007039 ORTHO05D008886 3.4e-90 335.5 237 66.7
Sed0014501 Sechium edule HOM05D007039 ORTHO05D008886 7.7e-90 334.3 242 65.3
Peaxi162Scf00195g01020 Petunia axillaris HOM05D007039 ORTHO05D008886 2.2e-89 332.8 242 66.9
AUR62041513 Chenopodium quinoa HOM05D007039 ORTHO05D008886 5.0e-89 331.6 240 65.8
PSO384G1372 Papaver somniferum HOM05D007039 ORTHO05D008886 9.4e-88 327.4 241 65.6
PSO339G1176 Papaver somniferum HOM05D007039 ORTHO05D008886 1.6e-87 326.6 241 65.6
Ah.06g186600 Amaranthus hybridus HOM05D007039 ORTHO05D008886 1.8e-86 323.2 240 64.6
Aqoxy2G01207 Aquilegia oxysepala HOM05D007039 ORTHO05D008886 8.8e-86 320.9 242 64.5
HPP92_006806 Vanilla planifolia HOM05D007039 ORTHO05D008886 2.6e-85 319.3 233 63.1
AUR62042080 Chenopodium quinoa HOM05D007039 ORTHO05D008886 8.2e-84 314.3 223 65.5
ClCG08G008260 Citrullus lanatus HOM05D007039 ORTHO05D008886 1.1e-83 313.9 277 56.0
EL10Ac4g08687 Beta vulgaris HOM05D007039 ORTHO05D008886 1.4e-83 313.5 240 62.9
Os01g0859400 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 6.9e-83 311.2 245 60.8
TAR633G1803 Trochodendron aralioides HOM05D007039 ORTHO05D008886 9.1e-83 310.8 235 63.8
Zm00001eb366890 Zea mays HOM05D007039 ORTHO05D008886 5.0e-81 305.1 245 60.0
Cpa.g.sc56.15 Carica papaya HOM05D007039 ORTHO05D008886 1.1e-80 303.9 185 73.0
Dinv09617 Davidia involucrata HOM05D007039 ORTHO05D008886 1.1e-80 303.9 244 63.5
Zm00001eb147230 Zea mays HOM05D007039 ORTHO05D008886 5.5e-80 301.6 245 59.2
PGSC0003DMG400023289 Solanum tuberosum HOM05D007039 ORTHO05D008886 2.2e-76 289.7 183 74.3
Oeu036841.1 Olea europaea HOM05D007039 ORTHO05D008886 4.5e-74 282.0 182 71.4
ECA233G2799 Erigeron canadensis HOM05D007039 ORTHO05D008886 1.3e-73 280.4 188 70.2
HPP92_009768 Vanilla planifolia HOM05D007039 ORTHO05D008886 3.2e-72 275.8 232 55.6
HPP92_009745 Vanilla planifolia HOM05D007039 ORTHO05D008886 1.2e-71 273.9 232 55.2
Glyma.10G279000 Glycine max HOM05D007039 ORTHO05D008886 2.7e-71 272.7 237 59.9
MSTRG.9060 Avicennia marina HOM05D007039 ORTHO05D008886 1.4e-70 270.4 182 69.8
FvH4_7g05130 Fragaria vesca HOM05D007039 ORTHO05D008886 9.7e-69 264.2 182 69.2
Eucgr.J00257 Eucalyptus grandis HOM05D007039 ORTHO05D008886 4.8e-68 261.9 182 65.9
PGR142G0235 Punica granatum HOM05D007039 ORTHO05D008886 5.9e-66 255.0 181 65.7
Mapoly0010s0050 Marchantia polymorpha HOM05D007039 ORTHO05D008886 2.9e-65 252.7 228 51.8
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 3.8e-65 252.3 187 64.7
CsaV3_6G004220 Cucumis sativus L. HOM05D007039 ORTHO05D008886 6.5e-65 251.5 180 64.4
Zm00001eb092690 Zea mays HOM05D007039 ORTHO05D008886 3.2e-64 249.2 232 50.4
Os12g0152800 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 3.0e-62 242.7 231 48.5
CSS0041399 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 3.4e-61 239.2 178 65.7
AagrBONN_evm.TU.Sc2ySwM_362.1562 Anthoceros agrestis HOM05D007039 ORTHO05D008886 1.8e-59 233.4 230 48.7
SMO367G0592 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 1.0e-57 227.6 229 49.3
Pp3c15_5790 Physcomitrium patens HOM05D007039 ORTHO05D008886 4.7e-55 218.8 230 46.1
AagrBONN_evm.TU.Sc2ySwM_228.3073 Anthoceros agrestis HOM05D007039 ORTHO05D008886 6.1e-55 218.4 215 47.9
CBR_g32363 Chara braunii HOM05D007039 ORTHO05D008886 1.3e-52 210.7 196 49.0
CDE08G0883 Ceratophyllum demersum HOM05D007039 ORTHO05D008886 5.9e-50 201.8 147 59.9
DCAR_019005 Daucus carota HOM05D007039 ORTHO05D008886 6.8e-46 188.3 109 75.2
Zm00001eb197030 Zea mays HOM05D007039 ORTHO05D008886 1.4e-43 180.6 179 45.3
SMO353G0277 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 2.6e-37 159.8 181 44.8
Cre01.g018100 Chlamydomonas reinhardtii HOM05D007039 ORTHO05D008886 7.0e-35 151.8 204 39.2
Nitab4.5_0000691g0070 Nicotiana tabacum HOM05D007039 ORTHO05D008886 3.0e-33 146.4 241 39.8
MD04G1248500 Malus domestica HOM05D007039 ORTHO05D008886 1.3e-28 131.0 106 64.2
PRCOL_00002076 Prasinoderma coloniale HOM05D007039 ORTHO05D008886 2.3e-25 120.2 237 30.0
MBI04_g07002_MAGBIO Magnolia biondii HOM05D001866 ORTHO05D001915 8.1e-07 58.5 149 28.9
PGR142G4198 Punica granatum HOM05D001866 ORTHO05D001915 2.4e-06 57.0 146 30.8
HPP92_006387 Vanilla planifolia HOM05D001866 ORTHO05D001915 3.1e-06 56.6 151 30.5
Actinidia17504 Actinidia chinensis HOM05D001866 ORTHO05D001915 9.0e-06 55.1 147 29.3
CANSAT56G0586 Cannabis sativa HOM05D001866 ORTHO05D001915 9.0e-06 55.1 174 27.6


User provided reference genes

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