Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p043559 Quercus lobata HOM05D001373 ORTHO05D001330 4.4e-33 144.1 74 100.0
QL04p044735 Quercus lobata HOM05D001373 ORTHO05D001330 2.4e-15 85.1 43 97.7
QL04p044773 Quercus lobata HOM05D001373 ORTHO05D001330 5.1e-13 77.4 43 90.7
Cfa011258 Carpinus fangiana HOM05D001373 ORTHO05D001330 1.6e-11 72.4 43 79.1
QL04p044744 Quercus lobata HOM05D001373 ORTHO05D001330 1.6e-11 72.4 43 83.7
CiPaw.14G032600 Carya illinoinensis HOM05D001373 ORTHO05D001330 6.2e-11 70.5 43 79.1
CiPaw.13G038300 Carya illinoinensis HOM05D001373 ORTHO05D001330 8.1e-11 70.1 43 79.1
Haze_02525 Corylus avellana HOM05D001373 ORTHO05D001330 8.1e-11 70.1 43 74.4
Thecc.10G107800 Theobroma cacao HOM05D001373 ORTHO05D001330 6.9e-10 67.0 43 72.1
CSS0015733 Camellia sinensis var. sinensis HOM05D001373 ORTHO05D001330 2.0e-09 65.5 43 74.4
Hma1.2p1_0356F.1_g133990 Hydrangea macrophylla HOM05D001373 ORTHO05D001330 3.4e-09 64.7 43 69.8
PSO339G2300 Papaver somniferum HOM05D001373 ORTHO05D001330 3.4e-09 64.7 64 53.1
PSO384G1565 Papaver somniferum HOM05D001373 ORTHO05D001330 3.4e-09 64.7 64 53.1
Medtr1g092880 Medicago truncatula HOM05D001373 ORTHO05D001330 7.6e-09 63.5 43 67.4
ATR0820G229 Amborella trichopoda HOM05D001373 ORTHO05D001330 1.3e-08 62.8 58 56.9
TWI63G1122 Tripterygium wilfordii HOM05D001373 ORTHO05D001330 1.3e-08 62.8 43 67.4
GSVIVG01011268001 Vitis vinifera HOM05D001373 ORTHO05D001330 1.3e-08 62.8 43 69.8
EL10Ac6g14542 Beta vulgaris HOM05D001373 ORTHO05D001330 2.2e-08 62.0 43 65.1
CANSAT21G2570 Cannabis sativa HOM05D001373 ORTHO05D001330 2.2e-08 62.0 49 63.3
ClCG08G008190 Citrullus lanatus HOM05D001373 ORTHO05D001330 2.2e-08 62.0 86 43.0
Nn6g34953 Nelumbo nucifera HOM05D001373 ORTHO05D001330 2.2e-08 62.0 43 65.1
EL10Ac6g14545 Beta vulgaris HOM05D001373 ORTHO05D001330 2.9e-08 61.6 43 67.4
Ciclev10031562m.g Citrus clementina HOM05D001373 ORTHO05D001330 2.9e-08 61.6 45 64.4
Cc00_g18840 Coffea canephora HOM05D001373 ORTHO05D001330 2.9e-08 61.6 43 67.4
Psat6g177600 Pisum sativum HOM05D001373 ORTHO05D001330 2.9e-08 61.6 43 62.8
TPR.G18692 Trifolium pratense HOM05D001373 ORTHO05D001330 2.9e-08 61.6 43 65.1
CANSAT56G3177 Cannabis sativa HOM05D001373 ORTHO05D001330 3.8e-08 61.2 43 67.4
AUR62002955 Chenopodium quinoa HOM05D001373 ORTHO05D001330 3.8e-08 61.2 43 65.1
AUR62007760 Chenopodium quinoa HOM05D001373 ORTHO05D001330 3.8e-08 61.2 43 65.1
Rhsim09G0143000 Rhododendron simsii HOM05D001373 ORTHO05D001330 3.8e-08 61.2 44 63.6
Eucgr.G02698 Eucalyptus grandis HOM05D001373 ORTHO05D001330 4.9e-08 60.8 43 62.8
Actinidia34717 Actinidia chinensis HOM05D001373 ORTHO05D001330 6.5e-08 60.5 43 67.4
Cc02_g09870 Coffea canephora HOM05D001373 ORTHO05D001330 6.5e-08 60.5 67 47.8
MELO3C030268.2 Cucumis melo HOM05D001373 ORTHO05D001330 6.5e-08 60.5 43 65.1
CsaV3_6G004160 Cucumis sativus L. HOM05D001373 ORTHO05D001330 6.5e-08 60.5 43 65.1
Dinv09593 Davidia involucrata HOM05D001373 ORTHO05D001330 6.5e-08 60.5 43 65.1
Ah.02g127310 Amaranthus hybridus HOM05D001373 ORTHO05D001330 8.4e-08 60.1 43 62.8
EL10Ac6g14544 Beta vulgaris HOM05D001373 ORTHO05D001330 8.4e-08 60.1 43 65.1
DCAR_006344 Daucus carota HOM05D001373 ORTHO05D001330 8.4e-08 60.1 43 60.5
Glyma.10G203700 Glycine max HOM05D001373 ORTHO05D001330 8.4e-08 60.1 56 55.4
Aqoxy4G02811 Aquilegia oxysepala HOM05D001373 ORTHO05D001330 1.1e-07 59.7 45 55.6
Cpa.g.sc183.3 Carica papaya HOM05D001373 ORTHO05D001330 1.4e-07 59.3 43 62.8
CDE06G1486 Ceratophyllum demersum HOM05D001373 ORTHO05D001330 1.4e-07 59.3 43 62.8
CDE08G1249 Ceratophyllum demersum HOM05D001373 ORTHO05D001330 1.4e-07 59.3 43 62.8
ECA232G4280 Erigeron canadensis HOM05D001373 ORTHO05D001330 1.4e-07 59.3 43 60.5
HanXRQChr05g0146901 Helianthus annuus HOM05D001373 ORTHO05D001330 1.4e-07 59.3 43 60.5
Lj5g0003680 Lotus japonicus HOM05D001373 ORTHO05D001330 1.4e-07 59.3 39 66.7
Phvul.007G103300 Phaseolus vulgaris HOM05D001373 ORTHO05D001330 1.4e-07 59.3 39 66.7
Cc02_g09850 Coffea canephora HOM05D001373 ORTHO05D001330 1.9e-07 58.9 67 50.7
Lsat_1_v5_gn_0_7541 Lactuca sativa HOM05D001373 ORTHO05D001330 1.9e-07 58.9 43 58.1
Prupe.2G079900 Prunus persica HOM05D001373 ORTHO05D001330 1.9e-07 58.9 43 60.5
Solyc11g007130.2 Solanum lycopersicum HOM05D001373 ORTHO05D001330 1.9e-07 58.9 43 58.1
Sopen11g003050 Solanum pennellii HOM05D001373 ORTHO05D001330 1.9e-07 58.9 43 58.1
PGSC0003DMG400019465 Solanum tuberosum HOM05D001373 ORTHO05D001330 1.9e-07 58.9 43 58.1
Atru.chr12.1004 Acer truncatum HOM05D001373 ORTHO05D001330 2.5e-07 58.5 43 65.1
PGR044G1873 Punica granatum HOM05D001373 ORTHO05D001330 2.5e-07 58.5 42 61.9
arahy.Tifrunner.gnm1.ann1.DMB65R Arachis hypogaea HOM05D001373 ORTHO05D001330 3.2e-07 58.2 39 69.2
Eucgr.J00999 Eucalyptus grandis HOM05D001373 ORTHO05D001330 3.2e-07 58.2 43 67.4
Lalb_Chr06g0170201 Lupinus albus HOM05D001373 ORTHO05D001330 3.2e-07 58.2 56 51.8
Peaxi162Scf00173g00074 Petunia axillaris HOM05D001373 ORTHO05D001330 3.2e-07 58.2 43 58.1
Peaxi162Scf00173g00824 Petunia axillaris HOM05D001373 ORTHO05D001330 3.2e-07 58.2 45 57.8
PGR142G2723 Punica granatum HOM05D001373 ORTHO05D001330 3.2e-07 58.2 43 62.8
Cc00_g18820 Coffea canephora HOM05D001373 ORTHO05D001330 4.2e-07 57.8 42 66.7
MBI17_g45458_MAGBIO Magnolia biondii HOM05D001373 ORTHO05D001330 4.2e-07 57.8 39 64.1
SalBow6G4659 Salvia bowleyana HOM05D001373 ORTHO05D001330 4.2e-07 57.8 50 50.0
Hund06776 Selenicereus undatus HOM05D001373 ORTHO05D001330 4.2e-07 57.8 43 62.8
MSTRG.9091 Avicennia marina HOM05D001373 ORTHO05D001330 5.5e-07 57.4 42 61.9
CAN.G730.35 Capsicum annuum HOM05D001373 ORTHO05D001330 5.5e-07 57.4 43 55.8
Oeu026574.1 Olea europaea HOM05D001373 ORTHO05D001330 5.5e-07 57.4 42 59.5
arahy.Tifrunner.gnm1.ann1.MWJV02 Arachis hypogaea HOM05D001373 ORTHO05D001330 7.1e-07 57.0 39 66.7
COL.COLO4_37500 Corchorus olitorius HOM05D001373 ORTHO05D001330 7.1e-07 57.0 43 62.8
Sed0004312 Sechium edule HOM05D001373 ORTHO05D001330 7.1e-07 57.0 43 60.5
Migut.F00904 Erythranthe guttata HOM05D001373 ORTHO05D001330 9.3e-07 56.6 42 59.5
VMungo0720G0665 Vigna mungo HOM05D001373 ORTHO05D001330 1.2e-06 56.2 39 64.1
FvH4_7g05740 Fragaria vesca HOM05D001373 ORTHO05D001330 1.6e-06 55.8 39 64.1
FAN01G2854 Fragaria x ananassa HOM05D001373 ORTHO05D001330 1.6e-06 55.8 39 64.1
FAN03G2160 Fragaria x ananassa HOM05D001373 ORTHO05D001330 1.6e-06 55.8 39 64.1
FAN06G0236 Fragaria x ananassa HOM05D001373 ORTHO05D001330 1.6e-06 55.8 39 64.1
FAN10G3078 Fragaria x ananassa HOM05D001373 ORTHO05D001330 1.6e-06 55.8 39 64.1
Manes.10G058000 Manihot esculenta HOM05D001373 ORTHO05D001330 1.6e-06 55.8 43 60.5
Medtr1g092870 Medicago truncatula HOM05D001373 ORTHO05D001330 1.6e-06 55.8 43 55.8
Oeu061779.1 Olea europaea HOM05D001373 ORTHO05D001330 1.6e-06 55.8 42 54.8
Eucgr.J00997 Eucalyptus grandis HOM05D001373 ORTHO05D001330 2.1e-06 55.5 50 58.0
RcHm_v2.0_Chr1g0332771 Rosa chinensis HOM05D001373 ORTHO05D001330 2.1e-06 55.5 39 61.5
Sabra08G0015000 Salix brachista HOM05D001373 ORTHO05D001330 3.5e-06 54.7 42 57.1
Sopen11g003060 Solanum pennellii HOM05D001373 ORTHO05D001330 4.6e-06 54.3 43 58.1
SEGI_32913 Sequoiadendron giganteum HOM05D001373 ORTHO05D001330 6.0e-06 53.9 66 40.9
PGSC0003DMG400019466 Solanum tuberosum HOM05D001373 ORTHO05D001330 6.0e-06 53.9 42 61.9
Potri.008G022100 Populus trichocarpa HOM05D001373 ORTHO05D001330 7.9e-06 53.5 42 57.1
Sabra10G0185800 Salix brachista HOM05D001373 ORTHO05D005988 7.9e-06 53.5 42 57.1
Sc04g0009080 Simmondsia chinensis HOM05D001373 ORTHO05D001330 7.9e-06 53.5 64 48.4


User provided reference genes

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