Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p043483 Quercus lobata HOM05D002272 ORTHO05D007337 1.4e-44 182.6 89 100.0
QL08p048213 Quercus lobata HOM05D002272 ORTHO05D007337 6.1e-37 157.1 84 90.5
CiPaw.02G048000 Carya illinoinensis HOM05D002272 ORTHO05D007337 2.0e-35 152.1 84 84.5
QL04p078062 Quercus lobata HOM05D002272 ORTHO05D007337 4.4e-35 151.0 78 94.9
Medtr3g118210 Medicago truncatula HOM05D002272 ORTHO05D007337 2.2e-34 148.7 84 83.3
Cfa003703 Carpinus fangiana HOM05D002272 ORTHO05D007337 2.8e-34 148.3 84 83.3
Cc02_g26530 Coffea canephora HOM05D002272 ORTHO05D007337 2.8e-34 148.3 84 82.1
Haze_15784 Corylus avellana HOM05D002272 ORTHO05D007337 2.8e-34 148.3 84 83.3
TPR.G38511 Trifolium pratense HOM05D002272 ORTHO05D007337 4.8e-34 147.5 84 82.1
ClCG06G000570 Citrullus lanatus HOM05D002272 ORTHO05D007337 8.2e-34 146.7 84 82.1
MELO3C022485.2 Cucumis melo HOM05D002272 ORTHO05D007337 8.2e-34 146.7 84 82.1
Sed0003205 Sechium edule HOM05D002272 ORTHO05D007337 1.4e-33 146.0 84 81.0
Glyma.04G002300 Glycine max HOM05D002272 ORTHO05D007337 2.4e-33 145.2 84 81.0
Lalb_Chr23g0264931 Lupinus albus HOM05D002272 ORTHO05D007337 4.1e-33 144.4 84 81.0
CSS0030271 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D007337 5.3e-33 144.1 84 81.0
CANSAT25G1467 Cannabis sativa HOM05D002272 ORTHO05D007337 5.3e-33 144.1 84 79.8
Lj1g0012726 Lotus japonicus HOM05D002272 ORTHO05D007337 7.0e-33 143.7 84 78.6
CsaV3_6G006340 Cucumis sativus L. HOM05D002272 ORTHO05D007337 9.1e-33 143.3 84 79.8
Eucgr.D01115 Eucalyptus grandis HOM05D002272 ORTHO05D007337 9.1e-33 143.3 84 79.8
THA.LOC104805803 Tarenaya hassleriana HOM05D002272 ORTHO05D007337 9.1e-33 143.3 84 79.8
Aqoxy5G02877 Aquilegia oxysepala HOM05D002272 ORTHO05D007337 1.2e-32 142.9 84 79.8
Sed0013689 Sechium edule HOM05D002272 ORTHO05D007337 1.2e-32 142.9 84 79.8
VMungo1309G1068 Vigna mungo HOM05D002272 ORTHO05D007337 1.2e-32 142.9 84 79.8
Actinidia31727 Actinidia chinensis HOM05D002272 ORTHO05D007337 1.6e-32 142.5 84 78.6
CSS0028572 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D007337 1.6e-32 142.5 84 79.8
Glyma.06G001800 Glycine max HOM05D002272 ORTHO05D007337 1.6e-32 142.5 84 79.8
Phvul.009G117700 Phaseolus vulgaris HOM05D002272 ORTHO05D007337 1.6e-32 142.5 84 78.6
Prupe.2G107400 Prunus persica HOM05D002272 ORTHO05D007337 1.6e-32 142.5 84 78.6
arahy.Tifrunner.gnm1.ann1.E051EM Arachis hypogaea HOM05D002272 ORTHO05D007337 2.0e-32 142.1 84 79.8
arahy.Tifrunner.gnm1.ann1.GT5X5C Arachis hypogaea HOM05D002272 ORTHO05D007337 2.0e-32 142.1 84 79.8
arahy.Tifrunner.gnm1.ann1.ZTJ4JW Arachis hypogaea HOM05D002272 ORTHO05D007337 2.0e-32 142.1 84 79.8
Ca_15285_v3 Cicer arietinum L. HOM05D002272 ORTHO05D007337 2.0e-32 142.1 84 79.8
Ca_15421_v3 Cicer arietinum L. HOM05D002272 ORTHO05D007337 2.0e-32 142.1 84 79.8
Thhalv10017066m.g Eutrema salsugineum HOM05D002272 ORTHO05D007337 2.0e-32 142.1 84 78.6
Ah.05g177380 Amaranthus hybridus HOM05D002272 ORTHO05D007337 2.6e-32 141.7 84 76.2
Carub.0004s2551 Capsella rubella HOM05D002272 ORTHO05D007337 3.5e-32 141.4 84 76.2
arahy.Tifrunner.gnm1.ann1.5G75KN Arachis hypogaea HOM05D002272 ORTHO05D007337 4.5e-32 141.0 86 77.9
PGR083G1235 Punica granatum HOM05D002272 ORTHO05D007337 4.5e-32 141.0 84 78.6
CSS0000101 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D007337 5.9e-32 140.6 84 76.2
CSS0028606 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D007337 5.9e-32 140.6 84 76.2
CARHR138100 Cardamine hirsuta HOM05D002272 ORTHO05D007337 5.9e-32 140.6 84 77.4
ECA234G0777 Erigeron canadensis HOM05D002272 ORTHO05D007337 5.9e-32 140.6 84 76.2
EL10Ac1g00685 Beta vulgaris HOM05D002272 ORTHO05D007337 7.7e-32 140.2 84 76.2
AL4G41670 Arabidopsis lyrata HOM05D002272 ORTHO05D007337 1.0e-31 139.8 84 76.2
AT2G43030 Arabidopsis thaliana HOM05D002272 ORTHO05D007337 1.0e-31 139.8 84 76.2
MD07G1082200 Malus domestica HOM05D002272 ORTHO05D007337 1.0e-31 139.8 84 75.0
SGA_v2.0_scaffold98G29370 Striga asiatica HOM05D002272 ORTHO05D007337 1.3e-31 139.4 84 76.2
TAR365G0152 Trochodendron aralioides HOM05D002272 ORTHO05D007337 1.3e-31 139.4 84 77.4
BcaC01g05267 Brassica carinata HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 76.2
A03p23920 Brassica napus HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 76.2
C03p28540 Brassica napus HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 76.2
BolC3t15219H Brassica oleracea HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 76.2
BraA03t11607Z Brassica rapa HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 76.2
FvH4_7g08200 Fragaria vesca HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 75.0
FAN01G1771 Fragaria x ananassa HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 75.0
FAN03G3487 Fragaria x ananassa HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 75.0
FAN06G0218 Fragaria x ananassa HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 75.0
Lsat_1_v5_gn_4_42200 Lactuca sativa HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 76.2
Nitab4.5_0000266g0150 Nicotiana tabacum HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 77.4
Nitab4.5_0004375g0030 Nicotiana tabacum HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 77.4
Solyc06g051200.3 Solanum lycopersicum HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 77.4
Sopen06g017110 Solanum pennellii HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 77.4
PGSC0003DMG400015641 Solanum tuberosum HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 77.4
vmacro13602 Vaccinium macrocarpon HOM05D002272 ORTHO05D007337 1.7e-31 139.0 84 76.2
Psat5g001240 Pisum sativum HOM05D002272 ORTHO05D007337 2.2e-31 138.7 84 76.2
Potri.013G070100 Populus trichocarpa HOM05D002272 ORTHO05D007337 2.2e-31 138.7 84 75.0
Sp4g25160 Schrenkiella parvula HOM05D002272 ORTHO05D007337 2.2e-31 138.7 84 75.0
Cpa.g.sc73.31 Carica papaya HOM05D002272 ORTHO05D007337 2.9e-31 138.3 84 75.0
HanXRQChr03g0088221 Helianthus annuus HOM05D002272 ORTHO05D007337 2.9e-31 138.3 84 73.8
Ciclev10032370m.g Citrus clementina HOM05D002272 ORTHO05D007337 3.8e-31 137.9 84 73.8
Oeu060722.1 Olea europaea HOM05D002272 ORTHO05D007337 3.8e-31 137.9 84 76.2
MD02G1230700 Malus domestica HOM05D002272 ORTHO05D007337 5.0e-31 137.5 84 73.8
Sabra13G0060800 Salix brachista HOM05D002272 ORTHO05D007337 5.0e-31 137.5 84 73.8
Migut.N01649 Erythranthe guttata HOM05D002272 ORTHO05D007337 6.5e-31 137.1 84 75.0
Migut.O00701 Erythranthe guttata HOM05D002272 ORTHO05D007337 6.5e-31 137.1 84 75.0
RcHm_v2.0_Chr1g0340951 Rosa chinensis HOM05D002272 ORTHO05D007337 6.5e-31 137.1 84 75.0
vmacro13604 Vaccinium macrocarpon HOM05D001733 ORTHO05D007337 6.5e-31 137.1 84 77.4
MSTRG.4991 Avicennia marina HOM05D002272 ORTHO05D007337 8.5e-31 136.7 84 73.8
Hund17157 Selenicereus undatus HOM05D002272 ORTHO05D007337 8.5e-31 136.7 84 73.8
Rhsim07G0048100 Rhododendron simsii HOM05D002272 ORTHO05D007337 1.1e-30 136.3 84 73.8
Lj9A617T61 Lonicera japonica HOM05D002272 ORTHO05D007337 1.5e-30 136.0 84 75.0
unitig_0.g1362 Utricularia gibba HOM05D002272 ORTHO05D007337 1.5e-30 136.0 84 73.8
Atru.chr2.1621 Acer truncatum HOM05D002272 ORTHO05D007337 1.9e-30 135.6 84 72.6
AUR62038001 Chenopodium quinoa HOM05D002272 ORTHO05D007337 1.9e-30 135.6 84 73.8
Aa31LG1G24810 Aethionema arabicum HOM05D002272 ORTHO05D007337 2.5e-30 135.2 84 73.8
CAN.G103.17 Capsicum annuum HOM05D002272 ORTHO05D007337 2.5e-30 135.2 84 73.8
AUR62023332 Chenopodium quinoa HOM05D002272 ORTHO05D007337 2.5e-30 135.2 84 73.8
Dinv43957 Davidia involucrata HOM05D002272 ORTHO05D007337 2.5e-30 135.2 84 73.8
Sc26g0001950 Simmondsia chinensis HOM05D002272 ORTHO05D007337 4.2e-30 134.4 84 71.4
Manes.09G134000 Manihot esculenta HOM05D002272 ORTHO05D007337 5.5e-30 134.0 84 71.4
SalBow5G0142 Salvia bowleyana HOM05D002272 ORTHO05D007337 5.5e-30 134.0 84 71.4
PSO357G0010 Papaver somniferum HOM05D002272 ORTHO05D007337 7.2e-30 133.7 84 71.4
HPP92_010022 Vanilla planifolia HOM05D002272 ORTHO05D007337 1.2e-29 132.9 84 72.6
unitig_61.g26435 Utricularia gibba HOM05D002272 ORTHO05D007337 1.6e-29 132.5 84 71.4
TWI60G0209 Tripterygium wilfordii HOM05D002272 ORTHO05D007337 2.1e-29 132.1 84 71.4
Nn3g17992 Nelumbo nucifera HOM05D002272 ORTHO05D007337 2.7e-29 131.7 84 71.4
HPP92_015293 Vanilla planifolia HOM05D002272 ORTHO05D007337 3.6e-29 131.3 84 71.4
CDE06G1113 Ceratophyllum demersum HOM05D002272 ORTHO05D007337 4.7e-29 131.0 84 69.0
CDE08G1023 Ceratophyllum demersum HOM05D002272 ORTHO05D007337 4.7e-29 131.0 84 69.0
DCAR_029571 Daucus carota HOM05D002272 ORTHO05D007337 8.0e-29 130.2 84 71.4
MBI18_g28942_MAGBIO Magnolia biondii HOM05D002272 ORTHO05D007337 8.0e-29 130.2 84 71.4
Mapoly0005s0275 Marchantia polymorpha HOM05D002272 ORTHO05D007337 8.0e-29 130.2 83 73.5
ATR0693G201 Amborella trichopoda HOM05D002272 ORTHO05D007337 1.8e-28 129.0 84 70.2
COL.COLO4_21824 Corchorus olitorius HOM05D002272 ORTHO05D007337 1.8e-28 129.0 84 70.2
Thecc.05G235900 Theobroma cacao HOM05D002272 ORTHO05D007337 1.8e-28 129.0 84 69.0
Pp3c6_28830 Physcomitrium patens HOM05D002272 ORTHO05D007337 2.3e-28 128.6 84 69.0
Gohir.A13G159300 Gossypium hirsutum HOM05D002272 ORTHO05D007337 6.7e-28 127.1 84 70.2
Gorai.013G198500 Gossypium raimondii HOM05D002272 ORTHO05D007337 6.7e-28 127.1 84 70.2
SMO223G0016 Selaginella moellendorffii HOM05D002272 ORTHO05D007337 6.7e-28 127.1 84 71.4
AagrBONN_evm.TU.Sc2ySwM_228.763 Anthoceros agrestis HOM05D002272 ORTHO05D007337 1.5e-27 125.9 84 70.2
Duzib128G1009 Durio zibethinus HOM05D002272 ORTHO05D007337 2.0e-27 125.6 84 67.9
Pp3c16_1020 Physcomitrium patens HOM05D002272 ORTHO05D007337 2.0e-27 125.6 84 66.7
Gohir.D13G164200 Gossypium hirsutum HOM05D002272 ORTHO05D007337 3.3e-27 124.8 84 69.0
Os02g0137200 Oryza sativa ssp. japonica HOM05D002272 ORTHO05D007337 2.0e-24 115.5 84 64.3
Zm00001eb231800 Zea mays HOM05D002272 ORTHO05D007337 2.0e-24 115.5 86 64.0
Peaxi162Scf01343g00156 Petunia axillaris HOM05D002272 ORTHO05D007337 6.5e-23 110.5 71 71.8
CBR_g23410 Chara braunii HOM05D002272 ORTHO05D007337 4.7e-21 104.4 74 63.5
HanXRQChr01g0008911 Helianthus annuus HOM05D002272 ORTHO05D007337 2.8e-18 95.1 56 75.0
HanXRQChr13g0409631 Helianthus annuus HOM05D002272 ORTHO05D007337 2.8e-18 95.1 56 75.0
MCO03G352 Micromonas commoda HOM05D002272 ORTHO05D007337 4.8e-18 94.4 84 53.6
Cre48.g761197 Chlamydomonas reinhardtii HOM05D002272 ORTHO05D007337 6.3e-18 94.0 87 50.6
GSVIVG01019355001 Vitis vinifera HOM05D002272 ORTHO05D007337 1.2e-13 79.7 45 80.0
PRCOL_00004909 Prasinoderma coloniale HOM05D002272 ORTHO05D007337 5.2e-12 74.3 83 45.8
CARHR283820 Cardamine hirsuta HOM05D002272 ORTHO05D007337 7.0e-09 63.9 54 57.4
Actinidia26429 Actinidia chinensis HOM05D002272 ORTHO05D007337 1.6e-08 62.8 37 75.7
Pp3c23_18210 Physcomitrium patens HOM05D002272 ORTHO05D005405 1.6e-08 62.8 84 41.7
Psat0s3953g0120 Pisum sativum HOM05D002272 ORTHO05D007337 1.0e-07 60.1 42 66.7
Mapoly0162s0018 Marchantia polymorpha HOM05D002272 ORTHO05D005405 6.6e-07 57.4 84 39.3
Actinidia18507 Actinidia chinensis HOM05D002272 ORTHO05D005405 8.6e-07 57.0 84 39.3
Potri.008G207000 Populus trichocarpa HOM05D002272 ORTHO05D005405 1.1e-06 56.6 84 40.5
Nitab4.5_0001437g0040 Nicotiana tabacum HOM05D002272 ORTHO05D005405 3.3e-06 55.1 84 36.9
Solyc03g117320.4 Solanum lycopersicum HOM05D002272 ORTHO05D005405 3.3e-06 55.1 84 38.1
Sopen03g036210 Solanum pennellii HOM05D002272 ORTHO05D005405 3.3e-06 55.1 84 38.1
PGSC0003DMG400014202 Solanum tuberosum HOM05D002272 ORTHO05D005405 3.3e-06 55.1 84 38.1
CBR_g27892 Chara braunii HOM05D002272 ORTHO05D005405 7.3e-06 53.9 84 38.1
AUR62007379 Chenopodium quinoa HOM05D002272 ORTHO05D005405 7.3e-06 53.9 84 38.1
Nitab4.5_0005622g0030 Nicotiana tabacum HOM05D002272 ORTHO05D005405 7.3e-06 53.9 84 36.9
Potri.010G002300 Populus trichocarpa HOM05D002272 ORTHO05D005405 7.3e-06 53.9 84 38.1
Medtr1g093060 Medicago truncatula HOM05D002272 ORTHO05D005405 9.5e-06 53.5 84 36.9
Medtr6g006970 Medicago truncatula HOM05D002272 ORTHO05D005405 9.5e-06 53.5 84 36.9


User provided reference genes

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