Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 1.3e-154 549.7 271 100.0
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 8.7e-119 430.6 253 83.0
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 1.8e-103 379.8 266 70.7
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 3.0e-103 379.0 262 71.8
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 8.7e-103 377.5 258 70.5
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 2.5e-102 375.9 263 70.0
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 8.2e-101 370.9 258 70.5
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 1.4e-100 370.2 263 70.3
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 3.4e-99 365.5 221 81.0
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 2.2e-98 362.8 269 69.1
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 2.2e-98 362.8 266 68.4
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 2.9e-98 362.5 265 67.5
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 6.5e-98 361.3 262 65.6
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 9.3e-97 357.5 262 66.8
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 2.7e-96 355.9 262 65.6
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 7.9e-96 354.4 266 66.5
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 7.9e-96 354.4 265 67.5
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 5.1e-95 351.7 261 65.5
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 2.5e-94 349.4 266 68.4
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 5.7e-94 348.2 264 67.0
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 9.7e-94 347.4 266 65.8
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 1.7e-93 346.7 266 65.8
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 1.7e-93 346.7 266 65.8
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 3.7e-93 345.5 266 66.9
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 4.1e-92 342.0 266 66.2
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 4.1e-92 342.0 262 65.6
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 2.6e-91 339.3 261 65.1
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 5.9e-91 338.2 268 64.9
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 7.7e-91 337.8 269 64.3
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 7.7e-91 337.8 269 64.3
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 6.5e-90 334.7 280 62.1
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 3.2e-89 332.4 262 63.4
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 4.2e-89 332.0 259 65.3
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 7.2e-89 331.3 244 69.3
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 3.9e-87 325.5 266 62.4
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 1.5e-86 323.6 262 62.6
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 9.7e-86 320.9 265 62.3
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 1.7e-85 320.1 259 62.2
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 2.2e-85 319.7 275 61.1
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 8.2e-85 317.8 254 64.6
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 3.1e-84 315.8 265 60.8
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 4.1e-84 315.5 265 60.8
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 9.1e-84 314.3 193 81.9
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 1.2e-83 313.9 266 61.7
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 1.5e-83 313.5 255 62.7
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 2.6e-83 312.8 265 60.0
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 2.2e-82 309.7 265 60.0
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 3.8e-82 308.9 255 60.8
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 3.8e-82 308.9 271 59.8
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 5.0e-82 308.5 256 62.5
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 6.5e-82 308.1 265 59.6
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 1.1e-81 307.4 265 59.2
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 1.1e-81 307.4 255 61.6
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 2.5e-81 306.2 268 58.6
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 4.2e-81 305.4 266 59.4
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 1.2e-80 303.9 300 53.7
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 2.1e-80 303.1 265 59.6
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 4.7e-80 302.0 267 59.6
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 1.4e-79 300.4 267 59.2
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 3.3e-78 295.8 230 67.0
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 4.4e-78 295.4 266 57.5
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 9.7e-78 294.3 266 58.3
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 2.2e-77 293.1 259 57.9
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 3.7e-77 292.4 274 56.6
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 4.8e-77 292.0 269 60.2
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.1e-76 290.8 270 55.6
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 1.8e-76 290.0 263 58.9
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 3.5e-75 285.8 191 71.2
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 7.7e-75 284.6 216 64.4
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 2.2e-74 283.1 255 57.3
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 5.0e-74 282.0 259 56.4
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 1.1e-73 280.8 213 67.1
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 1.1e-73 280.8 203 69.5
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 1.5e-73 280.4 194 71.6
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 3.2e-73 279.3 278 53.6
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 1.2e-72 277.3 267 56.6
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 1.4e-71 273.9 187 69.5
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 4.0e-71 272.3 277 55.6
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 1.7e-69 266.9 264 54.9
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 4.5e-67 258.8 255 53.7
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 1.2e-64 250.8 265 49.8
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 4.7e-64 248.8 283 49.8
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 6.1e-64 248.4 264 51.5
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 4.4e-62 242.3 259 53.7
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 9.8e-62 241.1 197 64.0
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 2.8e-61 239.6 267 52.4
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 2.7e-59 233.0 254 50.4
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 5.0e-58 228.8 191 63.4
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 5.5e-57 225.3 190 62.1
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 7.2e-57 224.9 204 59.8
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 4.7e-56 222.2 322 43.5
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 6.8e-55 218.4 146 68.5
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 6.8e-55 218.4 281 48.0
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 6.8e-55 218.4 257 48.2
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.7e-53 213.8 272 45.6
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.4e-52 210.7 205 56.6
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 4.4e-46 189.1 190 53.2
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 7.5e-46 188.3 155 61.3
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.0e-42 177.9 180 55.6
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.1e-39 166.4 160 56.9
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 1.5e-38 164.1 140 62.9
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 1.4e-36 157.5 266 40.2
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 2.1e-35 153.7 154 55.8
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 6.0e-35 152.1 167 56.3
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 3.0e-34 149.8 134 61.9
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 2.8e-32 143.3 161 54.0
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-30 137.1 107 57.0
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 4.9e-29 132.5 252 36.1
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.5e-25 120.9 70 75.7
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.1e-24 117.1 79 69.6
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 2.2e-21 107.1 178 35.4
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 3.9e-18 96.3 205 34.6
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 2.5e-17 93.6 210 31.4
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 5.8e-14 82.4 175 31.4


User provided reference genes

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