Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p042488 Quercus lobata HOM05D004606 ORTHO05D005086 6.4e-31 136.7 67 100.0
QL04p042372 Quercus lobata HOM05D004606 ORTHO05D005086 3.5e-29 131.0 67 95.5
QL04p042408 Quercus lobata HOM05D004606 ORTHO05D005086 1.5e-27 125.6 67 91.0
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 2.2e-23 111.7 67 83.6
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 2.2e-23 111.7 67 83.6
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 7.1e-22 106.7 67 77.6
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 1.2e-21 105.9 66 78.8
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 3.5e-21 104.4 67 76.1
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 1.0e-20 102.8 67 74.6
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 3.9e-20 100.9 66 77.3
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 5.1e-20 100.5 66 77.3
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 8.7e-20 99.8 66 75.8
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 1.5e-19 99.0 66 77.3
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 4.3e-19 97.4 67 68.7
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 5.6e-19 97.1 66 74.2
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 7.4e-19 96.7 66 74.2
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 9.6e-19 96.3 67 68.7
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 1.6e-18 95.5 66 74.2
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 2.1e-18 95.1 66 69.7
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 3.6e-18 94.4 66 69.7
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 3.6e-18 94.4 67 68.7
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 3.6e-18 94.4 67 68.7
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.8e-18 94.0 66 68.2
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 6.2e-18 93.6 67 67.2
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 6.2e-18 93.6 66 72.7
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 8.1e-18 93.2 64 70.3
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 8.1e-18 93.2 66 68.2
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 8.1e-18 93.2 66 68.2
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 8.1e-18 93.2 66 69.7
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.1e-17 92.8 66 66.7
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 1.1e-17 92.8 67 65.7
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 1.1e-17 92.8 67 68.7
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 1.4e-17 92.4 66 68.2
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 1.4e-17 92.4 66 68.2
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.4e-17 92.4 66 66.7
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 1.4e-17 92.4 66 68.2
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 1.4e-17 92.4 66 68.2
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 1.8e-17 92.0 66 66.7
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 1.8e-17 92.0 66 69.7
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 2.4e-17 91.7 67 65.7
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.4e-17 91.7 66 65.2
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.4e-17 91.7 66 65.2
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 3.1e-17 91.3 66 65.2
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 3.1e-17 91.3 66 71.2
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 4.0e-17 90.9 67 64.2
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 5.3e-17 90.5 66 68.2
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 5.3e-17 90.5 66 66.7
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 6.9e-17 90.1 66 68.2
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 6.9e-17 90.1 66 68.2
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 9.0e-17 89.7 66 66.7
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 9.0e-17 89.7 66 68.2
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 1.2e-16 89.4 66 66.7
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 1.2e-16 89.4 66 68.2
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.5e-16 89.0 66 66.7
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 1.5e-16 89.0 66 66.7
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.0e-16 88.6 66 66.7
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 2.0e-16 88.6 66 65.2
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 2.0e-16 88.6 66 68.2
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 2.6e-16 88.2 66 65.2
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 2.6e-16 88.2 66 66.7
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 3.4e-16 87.8 66 65.2
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 3.4e-16 87.8 66 66.7
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 3.4e-16 87.8 67 65.7
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 3.4e-16 87.8 66 63.6
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 3.4e-16 87.8 66 66.7
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 4.5e-16 87.4 63 69.8
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 7.6e-16 86.7 67 65.7
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 7.6e-16 86.7 67 61.2
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 9.9e-16 86.3 66 62.1
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 9.9e-16 86.3 62 64.5
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 1.7e-15 85.5 66 65.2
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 1.7e-15 85.5 66 63.6
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 1.7e-15 85.5 66 68.2
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 1.7e-15 85.5 67 64.2
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 1.7e-15 85.5 66 62.1
Atru.chr7.2354 Acer truncatum HOM05D004606 ORTHO05D005086 2.9e-15 84.7 65 66.2
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 2.9e-15 84.7 64 65.6
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 2.9e-15 84.7 66 62.1
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 3.8e-15 84.3 64 60.9
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.9e-15 84.0 64 62.5
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 6.4e-15 83.6 66 63.6
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 1.1e-14 82.8 66 63.6
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 1.1e-14 82.8 66 63.6
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.2e-14 81.3 66 57.6
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.2e-14 81.3 66 57.6
TPR.G9107 Trifolium pratense HOM05D004606 ORTHO05D005086 3.2e-14 81.3 57 68.4
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 9.3e-14 79.7 66 60.6
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 9.3e-14 79.7 64 62.5
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 1.2e-13 79.3 66 60.6
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 6.0e-13 77.0 67 56.7
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 6.0e-13 77.0 63 61.9
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 7.9e-13 76.6 67 56.7
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 7.9e-13 76.6 67 56.7
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 7.9e-13 76.6 67 56.7
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 7.9e-13 76.6 66 60.6
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.0e-12 76.3 66 59.1
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 1.0e-12 76.3 66 60.6
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.8e-12 75.5 67 55.2
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 1.8e-12 75.5 66 60.6
MSTRG.25861 Avicennia marina HOM05D004606 ORTHO05D005086 3.0e-12 74.7 66 57.6
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.9e-12 74.3 67 55.2
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 3.9e-12 74.3 66 60.6
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 3.9e-12 74.3 66 60.6
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 8.7e-12 73.2 53 69.8
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 8.7e-12 73.2 65 56.9
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 1.1e-11 72.8 63 54.0
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.5e-11 72.4 66 57.6
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 1.9e-11 72.0 53 67.9
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 1.9e-11 72.0 53 67.9
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.9e-11 72.0 62 56.5
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 1.9e-11 72.0 53 67.9
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 3.3e-11 71.2 66 56.1
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 5.6e-11 70.5 53 66.0
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 7.4e-11 70.1 66 48.5
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 7.4e-11 70.1 53 67.9
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 1.3e-10 69.3 66 57.6
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 1.6e-10 68.9 53 66.0
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 1.6e-10 68.9 67 52.2
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 2.1e-10 68.6 67 55.2
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.8e-10 68.2 57 56.1
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 2.8e-10 68.2 66 53.0
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 2.8e-10 68.2 66 53.0
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 4.8e-10 67.4 53 64.2
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 6.2e-10 67.0 53 62.3
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 8.2e-10 66.6 53 62.3
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 1.1e-09 66.2 57 61.4
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 1.8e-09 65.5 53 58.5
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 1.8e-09 65.5 58 56.9
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 2.4e-09 65.1 53 60.4
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 2.4e-09 65.1 53 64.2
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 4.0e-09 64.3 44 65.9
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 1.7e-07 58.9 66 45.5
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 1.4e-06 55.8 66 43.9
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 1.9e-06 55.5 54 51.9


User provided reference genes

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