Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 0.0e+00 1270.4 669 100.0
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.4e-210 736.9 709 60.9
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 3.3e-159 566.2 686 52.0
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 8.3e-155 551.6 732 51.0
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 2.4e-154 550.1 590 58.5
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 7.3e-151 538.5 598 57.0
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 7.6e-148 528.5 592 56.8
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 3.8e-147 526.2 685 50.2
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 6.4e-147 525.4 597 56.3
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 4.1e-146 522.7 682 50.6
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 6.6e-144 515.4 585 56.9
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 1.2e-142 511.1 705 50.6
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 1.6e-142 510.8 706 49.4
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 8.4e-139 498.4 771 45.9
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 8.4e-139 498.4 587 54.5
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 2.8e-134 483.4 688 48.4
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 6.2e-134 482.3 691 49.5
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 1.2e-132 478.0 771 44.7
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 5.4e-130 469.2 717 46.3
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 3.5e-129 466.5 698 47.1
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 2.3e-128 463.8 724 46.3
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 6.7e-128 462.2 706 47.2
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 5.6e-127 459.1 720 44.6
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 2.4e-125 453.8 702 46.0
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 4.5e-124 449.5 717 44.8
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 7.9e-121 438.7 669 45.6
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 6.7e-120 435.6 717 44.2
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 1.5e-119 434.5 666 44.9
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.3e-118 431.4 696 44.5
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 1.1e-117 428.3 671 44.7
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.1e-117 428.3 664 45.2
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 1.8e-117 427.6 675 45.8
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.8e-117 427.6 677 44.5
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 9.0e-117 425.2 758 43.4
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 7.6e-116 422.2 754 43.4
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.0e-115 421.8 758 43.3
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 2.2e-115 420.6 295 79.3
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.5e-114 417.2 711 42.2
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 2.5e-114 417.2 607 46.6
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.6e-113 414.5 695 44.3
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.0e-112 411.8 705 44.0
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 3.9e-112 409.8 675 44.9
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 3.7e-110 403.3 610 45.1
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 5.3e-109 399.4 616 47.9
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.0e-107 395.2 713 40.5
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 6.1e-105 386.0 624 43.8
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.7e-102 376.7 763 40.0
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 3.1e-101 373.6 830 38.8
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.9e-99 367.1 762 39.9
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.1e-98 365.2 671 42.8
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.1e-98 365.2 685 40.9
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.6e-97 361.3 613 41.8
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.1e-97 360.9 751 37.8
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 1.5e-95 354.8 683 42.0
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 3.4e-92 343.6 640 42.2
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 4.5e-92 343.2 393 57.0
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 2.9e-91 340.5 661 39.8
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 4.2e-90 336.7 621 40.6
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 3.0e-88 330.5 688 39.0
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 6.7e-88 329.3 698 38.8
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 8.8e-88 328.9 681 40.5
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 2.8e-86 323.9 482 48.8
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 2.4e-85 320.9 622 40.5
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 2.6e-84 317.4 691 39.8
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 4.5e-84 316.6 700 39.3
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 5.0e-83 313.2 696 39.4
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 4.2e-82 310.1 683 37.8
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.0e-80 305.4 622 40.7
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 2.0e-79 301.2 697 37.0
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 7.5e-79 299.3 662 38.5
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 1.3e-78 298.5 679 38.3
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.7e-78 298.1 689 37.4
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.5e-76 290.4 668 36.1
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 5.9e-76 289.7 669 37.5
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 5.9e-76 289.7 709 38.2
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 1.2e-73 282.0 667 38.7
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 2.3e-72 277.7 349 50.4
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 5.4e-69 266.5 666 36.0
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 7.0e-69 266.2 609 35.0
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.2e-68 265.4 532 40.6
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 5.5e-66 256.5 599 37.4
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.4e-64 251.9 607 37.7
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 5.7e-63 246.5 568 35.2
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 2.8e-62 244.2 637 34.7
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 2.8e-62 244.2 638 34.6
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.1e-61 242.3 499 40.5
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 3.1e-61 240.7 606 34.5
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 4.1e-61 240.4 611 37.5
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 5.4e-61 240.0 599 35.4
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 5.4e-61 240.0 677 33.1
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 5.9e-60 236.5 497 39.8
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 1.7e-59 235.0 664 32.2
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 3.8e-59 233.8 573 35.6
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 1.1e-58 232.3 633 35.7
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 4.3e-58 230.3 675 34.2
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 3.6e-57 227.3 609 33.8
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.8e-56 224.9 527 38.0
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 6.8e-56 223.0 647 32.3
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 1.5e-55 221.9 527 37.2
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 2.6e-55 221.1 697 31.4
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 7.5e-55 219.5 573 33.7
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 7.5e-55 219.5 573 33.7
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 2.2e-54 218.0 696 31.2
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 2.9e-54 217.6 559 36.1
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 3.5e-52 210.7 560 34.5
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 2.3e-51 208.0 710 30.1
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 2.5e-50 204.5 701 30.0
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.2e-49 202.2 608 32.2
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 1.2e-49 202.2 544 33.5
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 1.6e-49 201.8 594 32.2
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 4.7e-49 200.3 614 32.6
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 2.1e-41 174.9 370 38.9
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 8.1e-41 172.9 620 31.9
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 3.1e-40 171.0 671 31.4
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 7.3e-34 149.8 705 30.2
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 2.6e-31 141.4 317 38.2
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 8.4e-30 136.3 439 34.6
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 1.1e-29 136.0 383 36.8
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.4e-29 135.6 293 38.9
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 1.9e-29 135.2 593 28.8
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.6e-28 132.1 702 29.3
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 7.8e-28 129.8 522 28.2
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 4.3e-26 124.0 211 42.7
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 5.1e-19 100.5 419 30.5
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 6.2e-17 93.6 165 41.8
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.1e-16 92.8 366 30.1
Zm00001eb049990 Zea mays HOM05D005926 ORTHO05D007001 9.0e-08 63.2 163 35.0
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 1.7e-06 58.9 307 27.4
Pp3c6_4890 Physcomitrium patens HOM05D031130 ORTHO05D019295 2.2e-06 58.5 69 49.3
SEGI_03290 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 3.8e-06 57.8 106 35.8


User provided reference genes

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