Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 5.6e-50 200.7 103 100.0
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 6.1e-49 197.2 103 98.1
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 5.0e-43 177.6 103 85.4
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 8.0e-41 170.2 103 84.5
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.8e-40 169.1 103 84.5
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 4.0e-40 167.9 103 83.5
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 1.6e-36 156.0 103 75.7
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 6.0e-36 154.1 103 74.8
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 7.3e-34 147.1 98 74.5
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 7.3e-34 147.1 103 74.8
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 2.8e-33 145.2 98 74.5
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 8.1e-33 143.7 102 70.6
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 8.1e-33 143.7 103 70.9
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 8.1e-33 143.7 100 70.0
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 8.1e-33 143.7 100 70.0
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 8.1e-33 143.7 100 70.0
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 2.3e-32 142.1 100 69.0
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 5.2e-32 141.0 103 69.9
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 6.8e-32 140.6 103 68.0
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 8.9e-32 140.2 103 68.0
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.2e-31 139.8 103 68.0
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.2e-31 139.8 103 68.0
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.2e-31 139.8 100 67.0
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.2e-31 139.8 100 67.0
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 1.5e-31 139.4 98 71.4
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.5e-31 139.4 103 67.0
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 1.5e-31 139.4 103 67.0
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 1.5e-31 139.4 103 68.0
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 1.5e-31 139.4 103 68.0
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 1.5e-31 139.4 103 68.0
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 2.6e-31 138.7 103 67.0
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 2.6e-31 138.7 98 68.4
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 7.5e-31 137.1 98 68.4
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 1.7e-30 136.0 98 70.4
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 2.9e-30 135.2 102 66.7
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 3.7e-30 134.8 98 66.3
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.9e-30 134.4 98 68.4
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.9e-30 134.4 98 68.4
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 8.3e-30 133.7 98 68.4
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 1.4e-29 132.9 96 67.7
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 1.4e-29 132.9 96 67.7
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 1.4e-29 132.9 96 67.7
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 1.9e-29 132.5 96 67.7
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 1.9e-29 132.5 96 67.7
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 1.9e-29 132.5 96 67.7
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 1.9e-29 132.5 96 67.7
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 1.9e-29 132.5 96 67.7
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 1.9e-29 132.5 96 67.7
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 1.9e-29 132.5 96 67.7
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 1.9e-29 132.5 96 65.6
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 4.1e-29 131.3 96 66.7
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 5.4e-29 131.0 103 67.0
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 5.4e-29 131.0 98 65.3
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 7.1e-29 130.6 96 65.6
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 9.2e-29 130.2 96 65.6
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 9.2e-29 130.2 98 68.4
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 1.2e-28 129.8 98 65.3
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 1.6e-28 129.4 96 65.6
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.6e-28 129.4 98 66.3
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 1.6e-28 129.4 98 64.3
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 2.1e-28 129.0 96 64.6
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 2.7e-28 128.6 96 65.6
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 3.5e-28 128.3 98 64.3
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 4.6e-28 127.9 99 65.7
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 6.0e-28 127.5 98 62.2
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 6.0e-28 127.5 98 63.3
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 1.0e-27 126.7 103 66.0
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 1.0e-27 126.7 103 66.0
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 1.0e-27 126.7 98 62.2
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 1.0e-27 126.7 98 63.3
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 1.0e-27 126.7 98 63.3
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 1.0e-27 126.7 98 63.3
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 3.9e-27 124.8 101 63.4
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 3.9e-27 124.8 98 63.3
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 3.9e-27 124.8 97 66.0
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 6.6e-27 124.0 98 61.2
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 6.6e-27 124.0 98 62.2
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 6.6e-27 124.0 92 67.4
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.9e-26 122.5 91 64.8
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 2.5e-26 122.1 97 63.9
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 5.6e-26 120.9 98 60.2
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 5.6e-26 120.9 98 61.2
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 6.2e-25 117.5 86 65.1
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 1.4e-24 116.3 98 61.2
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 4.0e-24 114.8 87 64.4
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 5.2e-24 114.4 88 63.6
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 8.9e-24 113.6 87 65.5
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 8.9e-24 113.6 87 65.5
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 2.0e-23 112.5 100 55.0
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 1.7e-22 109.4 81 64.2
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 8.4e-22 107.1 94 56.4
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.9e-21 105.9 91 56.0
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 4.3e-18 94.7 70 61.4
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 9.6e-18 93.6 62 71.0
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 4.8e-17 91.3 79 57.0
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 8.1e-17 90.5 62 69.4
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 8.1e-17 90.5 62 69.4
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 1.4e-16 89.7 97 51.5
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.8e-16 89.4 77 61.0
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 5.3e-16 87.8 61 70.5
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.5e-15 86.3 62 64.5
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 4.4e-15 84.7 96 46.9
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 7.6e-15 84.0 63 65.1
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 1.3e-14 83.2 80 52.5
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 9.3e-13 77.0 90 55.6
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.6e-12 76.3 62 58.1
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 2.1e-12 75.9 74 50.0
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 4.6e-12 74.7 49 71.4
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 3.0e-11 72.0 53 64.2
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 7.3e-10 67.4 59 52.5
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 1.5e-07 59.7 70 47.1
Sabra16G0250800 Salix brachista HOM05D007153 ORTHO05D009081 3.4e-07 58.5 44 63.6
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 7.6e-07 57.4 92 38.0
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 1.3e-06 56.6 39 64.1
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 3.8e-06 55.1 92 37.0
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 6.4e-06 54.3 53 47.2


User provided reference genes

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