Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 2.5e-44 181.8 97 100.0
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 6.2e-27 124.0 59 94.9
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.5e-20 102.8 55 85.5
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 3.3e-20 101.7 56 78.6
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 4.3e-20 101.3 57 78.9
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 7.4e-20 100.5 56 82.1
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 7.4e-20 100.5 57 80.7
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.4e-18 96.3 58 75.9
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.1e-18 95.1 56 75.0
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.1e-18 95.1 56 75.0
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 3.1e-18 95.1 61 77.0
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 3.1e-18 95.1 58 72.4
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 9.0e-18 93.6 56 71.4
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.5e-17 92.8 56 73.2
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 2.6e-17 92.0 58 69.0
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.8e-17 90.9 62 72.6
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 7.6e-17 90.5 61 73.8
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 7.6e-17 90.5 57 71.9
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 1.0e-16 90.1 58 67.2
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.8e-16 88.2 62 67.7
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.1e-15 86.7 59 64.4
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.4e-15 86.3 50 74.0
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.4e-15 86.3 56 66.1
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 2.5e-15 85.5 49 77.6
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 5.5e-15 84.3 69 56.5
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 1.6e-14 82.8 50 74.0
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.6e-14 82.8 50 74.0
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 1.3e-13 79.7 58 60.3
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.8e-13 79.3 54 68.5
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 3.0e-13 78.6 51 74.5
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.5e-12 76.3 54 64.8
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.5e-12 76.3 54 63.0
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.5e-12 76.3 55 60.0
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.5e-12 76.3 55 60.0
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.5e-12 76.3 67 56.7
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.3e-11 73.2 56 58.9
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.6e-11 72.8 58 56.9
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.2e-11 72.4 53 64.2
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.8e-11 72.0 57 59.6
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.8e-11 72.0 57 59.6
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.7e-11 71.6 50 60.0
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 4.8e-11 71.2 56 60.7
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 6.3e-11 70.9 60 58.3
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 6.3e-11 70.9 56 55.4
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 1.1e-10 70.1 67 49.3
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.4e-10 69.7 47 61.7
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.4e-10 68.9 67 49.3
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.4e-10 68.9 61 50.8
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 2.4e-10 68.9 47 59.6
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 2.4e-10 68.9 50 66.0
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 2.4e-10 68.9 53 62.3
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 5.3e-10 67.8 50 64.0
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 5.3e-10 67.8 57 56.1
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 6.9e-10 67.4 61 49.2
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 6.9e-10 67.4 61 49.2
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 6.9e-10 67.4 61 49.2
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 6.9e-10 67.4 61 49.2
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 6.9e-10 67.4 61 49.2
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 6.9e-10 67.4 56 55.4
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 6.9e-10 67.4 54 57.4
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 6.9e-10 67.4 50 58.0
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 6.9e-10 67.4 59 54.2
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 9.0e-10 67.0 57 54.4
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 9.0e-10 67.0 50 58.0
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.2e-09 66.6 61 50.8
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.5e-09 66.2 60 56.7
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.5e-09 66.2 57 56.1
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 3.4e-09 65.1 60 56.7
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 3.4e-09 65.1 60 56.7
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 3.4e-09 65.1 60 55.0
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 3.4e-09 65.1 54 53.7
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 5.9e-09 64.3 61 52.5
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 1.0e-08 63.5 49 61.2
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-08 63.2 44 56.8
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.3e-08 63.2 67 46.3
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.7e-08 62.8 52 59.6
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 2.2e-08 62.4 55 50.9
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 2.2e-08 62.4 54 57.4
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 2.2e-08 62.4 50 56.0
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 2.9e-08 62.0 53 50.9
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.8e-08 61.6 58 55.2
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 5.0e-08 61.2 57 54.4
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 6.5e-08 60.8 60 53.3
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 6.5e-08 60.8 52 55.8
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 6.5e-08 60.8 52 57.7
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 8.5e-08 60.5 61 45.9
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 8.5e-08 60.5 61 45.9
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 8.5e-08 60.5 60 48.3
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 8.5e-08 60.5 61 45.9
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 1.4e-07 59.7 60 48.3
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 1.4e-07 59.7 49 65.3
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.4e-07 59.7 60 51.7
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.9e-07 59.3 57 47.4
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 1.9e-07 59.3 60 48.3
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.5e-07 58.9 57 47.4
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 2.5e-07 58.9 55 47.3
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 2.5e-07 58.9 55 47.3
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 3.2e-07 58.5 57 47.4
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 4.2e-07 58.2 60 50.0
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 5.5e-07 57.8 60 50.0
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.3e-07 57.0 57 45.6
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 1.6e-06 56.2 52 48.1
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.6e-06 56.2 47 55.3
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.6e-06 56.2 50 56.0
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 2.1e-06 55.8 57 45.6
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 3.6e-06 55.1 54 51.9
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 3.6e-06 55.1 53 47.2
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 3.6e-06 55.1 54 51.9
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 3.6e-06 55.1 54 51.9
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 3.6e-06 55.1 53 47.2
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 3.6e-06 55.1 51 51.0
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 6.1e-06 54.3 54 46.3
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 6.1e-06 54.3 54 46.3
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 6.1e-06 54.3 57 43.9
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 6.1e-06 54.3 56 51.8
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 6.1e-06 54.3 49 57.1
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 7.9e-06 53.9 54 50.0
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 7.9e-06 53.9 54 44.4
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 7.9e-06 53.9 53 56.6
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 7.9e-06 53.9 56 46.4


User provided reference genes

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