Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 2023.8 1024 100.0
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1736.1 1022 85.7
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1662.5 1023 82.7
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1590.1 1023 78.2
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1584.7 1024 79.1
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1573.5 1023 77.3
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1568.9 1023 77.0
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1566.6 1022 76.7
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1561.2 1022 77.2
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1559.3 1023 76.6
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1551.2 1022 76.2
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1542.3 1023 76.1
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1537.7 1023 76.0
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1536.2 1026 74.3
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1535.8 1027 74.6
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1535.4 1054 74.0
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1535.0 1027 74.5
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1517.7 1022 75.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1512.7 1022 74.4
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1510.0 1023 75.5
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1509.6 1023 74.9
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1500.0 1023 72.7
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1494.6 1025 73.5
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1493.4 1026 73.6
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1492.2 1064 72.4
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1484.9 1022 73.2
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1480.7 1023 73.1
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1479.2 1027 73.0
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1478.0 1025 72.7
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1476.1 1027 72.9
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1475.7 1025 72.8
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1474.5 1000 73.3
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1472.2 1024 72.9
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1471.1 1023 73.0
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1471.1 1022 71.3
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1471.1 1025 72.3
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1468.4 1029 72.4
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1464.5 1025 71.9
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1464.1 927 78.1
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1463.0 1024 72.3
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1457.6 1023 72.0
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1456.4 1026 71.4
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1456.0 1023 71.5
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1454.5 999 74.2
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1450.6 1023 70.9
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1448.0 1067 69.3
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1446.4 1072 69.1
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1441.8 1023 70.7
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1441.8 1029 71.3
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1439.5 1022 70.5
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1436.8 1097 68.2
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1433.7 1026 70.7
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1431.0 1023 69.8
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1429.1 1023 70.1
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1425.6 1022 70.6
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1418.3 1028 70.1
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1416.0 1028 70.3
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1412.5 1029 70.8
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1408.3 1027 68.9
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1403.3 1022 68.6
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1398.3 1084 67.3
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1397.1 1023 68.6
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1395.9 1023 67.9
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1395.2 1023 67.9
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1392.5 1026 68.8
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1391.7 1026 68.8
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1390.2 1023 68.5
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1387.5 1024 68.8
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1384.0 1023 68.1
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1380.2 914 76.0
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1375.9 1026 67.8
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1372.8 1026 67.7
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1367.1 1023 67.4
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1366.7 1027 68.2
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1366.7 1023 67.4
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1366.3 1078 65.4
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1364.7 1026 68.0
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1360.9 1025 68.9
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1359.4 1024 67.6
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1350.1 1036 66.7
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1343.9 1025 66.9
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1340.1 1022 66.8
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1337.8 1022 66.9
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1337.8 1041 66.8
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1335.1 1022 66.7
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1326.2 1022 66.4
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1325.8 1022 66.4
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1309.3 1026 65.8
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1297.7 887 75.5
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1289.2 1022 65.5
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1283.9 1023 64.5
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1267.3 1041 62.7
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1255.4 887 71.0
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1196.0 1022 59.9
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1155.6 967 60.8
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1147.5 1023 59.0
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1144.8 1048 57.9
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1141.3 1022 58.8
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1114.0 1031 57.2
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 0.0e+00 1087.4 793 68.5
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 1.7e-303 1046.2 816 65.3
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 5.2e-273 944.9 1032 49.4
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 5.7e-272 941.4 1029 49.5
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 1.0e-260 904.0 707 67.5
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 4.6e-253 878.6 1025 49.1
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 1.9e-251 873.2 1050 46.5
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 6.2e-210 735.3 994 45.1
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 2.4e-201 706.8 427 82.4
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.8e-196 690.6 624 58.3
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 5.9e-192 675.6 607 58.5
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 5.3e-185 652.5 1091 37.8
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 5.0e-159 566.2 669 49.3
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.8e-145 521.2 1175 33.1
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.1e-141 507.7 1037 33.7
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.0e-131 474.6 333 70.9
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.3e-124 451.1 305 73.4
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 9.3e-113 412.5 575 45.2
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.9e-98 364.4 268 68.7
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.9e-98 364.4 268 68.7
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.3e-95 354.8 340 53.8
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.3e-87 328.2 919 29.3
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 1.2e-83 315.8 234 67.5
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 5.9e-83 313.5 233 67.8
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 8.2e-69 266.5 217 67.3
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 1.2e-64 252.7 173 73.4
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.3e-61 242.7 160 78.8
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.0e-47 194.5 161 62.1
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.7e-43 181.8 104 80.8
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 4.7e-40 171.0 93 89.2
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 9.2e-36 156.8 224 45.1
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.3e-33 147.9 120 68.3
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.2e-24 119.8 115 53.0
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 6.2e-24 117.5 115 51.3
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 8.9e-23 113.6 883 22.8
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 2.9e-21 108.6 93 58.1
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 5.4e-20 104.4 160 40.6
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.6e-19 102.8 151 37.7
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 6.6e-18 97.4 62 79.0
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 1.5e-17 96.3 103 49.5
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 5.2e-15 87.8 91 53.8
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 6.8e-15 87.4 79 54.4
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 2.0e-14 85.9 117 46.2
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 5.8e-14 84.3 124 41.9
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.3e-10 73.2 128 36.7
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 2.5e-09 68.9 157 35.0
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 4.7e-08 64.7 95 37.9
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 1.1e-07 63.5 44 70.5
Gohir.A06G146601 Gossypium hirsutum HOM05D000669 ORTHO05D015433 1.8e-07 62.8 92 42.4
Gohir.A04G047850 Gossypium hirsutum HOM05D004478 ORTHO05D016211 2.3e-07 62.4 59 55.9
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 3.1e-07 62.0 57 57.9
Gohir.A06G137902 Gossypium hirsutum HOM05D002560 ORTHO05D016211 4.0e-07 61.6 42 69.0
GSVIVG01029815001 Vitis vinifera HOM05D004478 ORTHO05D016211 4.0e-07 61.6 33 84.8
Gohir.A13G120100 Gossypium hirsutum HOM05D000181 ORTHO05D016211 6.8e-07 60.8 45 64.4
Gohir.A03G068800 Gossypium hirsutum HOM05D000306 ORTHO05D016211 2.0e-06 59.3 44 65.9


User provided reference genes

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