Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 3.7e-146 521.5 270 100.0
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 4.9e-122 441.4 271 85.2
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.1e-121 440.3 276 83.7
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.1e-116 423.7 259 83.4
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 5.4e-113 411.4 268 81.0
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 2.1e-112 409.5 275 79.6
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 2.3e-111 406.0 268 79.5
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 5.1e-111 404.8 269 78.8
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 6.6e-111 404.4 264 79.5
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.5e-110 402.5 264 78.8
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 3.6e-109 398.7 269 77.0
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 8.1e-109 397.5 264 78.4
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.1e-108 397.1 264 79.2
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 2.2e-106 389.4 264 76.1
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 4.9e-106 388.3 272 76.1
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 6.4e-106 387.9 271 76.0
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 6.4e-106 387.9 271 73.4
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 8.4e-106 387.5 264 75.4
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.1e-105 387.1 272 73.5
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.1e-105 387.1 263 75.7
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.9e-105 386.3 264 76.5
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 7.1e-105 384.4 273 73.6
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 7.1e-105 384.4 264 75.8
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 9.3e-105 384.0 270 74.1
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 1.6e-104 383.3 265 77.7
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 2.7e-104 382.5 264 75.4
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.5e-104 382.1 286 70.6
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 4.6e-104 381.7 273 72.9
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 4.6e-104 381.7 267 74.5
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 6.0e-104 381.3 264 75.0
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.3e-103 380.2 266 75.9
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.3e-103 380.2 264 73.9
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 1.3e-103 380.2 273 72.9
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.8e-103 379.8 274 75.2
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 5.1e-103 378.3 271 72.3
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 5.1e-103 378.3 275 71.6
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 6.7e-103 377.9 274 72.6
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.1e-102 377.1 266 73.3
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 4.3e-102 375.2 273 72.2
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 7.4e-102 374.4 275 71.6
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.6e-101 373.2 308 65.6
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 1.6e-101 373.2 270 74.4
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 2.1e-101 372.9 266 72.9
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.1e-101 372.9 273 72.2
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 2.1e-101 372.9 265 73.6
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 2.1e-101 372.9 273 72.5
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 8.1e-101 370.9 269 71.4
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.4e-100 370.2 276 71.0
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.4e-100 370.2 276 71.0
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 1.8e-100 369.8 265 76.2
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.3e-100 368.2 276 70.3
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 6.9e-100 367.9 272 70.2
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.0e-99 366.3 276 70.7
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 4.5e-99 365.2 269 70.3
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.3e-98 363.6 264 71.2
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.4e-97 360.1 270 69.3
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.5e-97 358.2 285 68.1
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 5.5e-97 358.2 274 68.6
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.2e-96 357.1 263 70.3
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.2e-96 357.1 265 70.9
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.6e-96 356.7 265 70.9
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 7.9e-96 354.4 275 68.4
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 2.3e-95 352.8 272 68.8
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 6.7e-95 351.3 271 69.7
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.5e-94 350.1 338 58.9
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 2.5e-94 349.4 257 70.8
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 3.3e-94 349.0 247 73.3
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 4.3e-94 348.6 263 70.3
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 4.3e-94 348.6 272 68.4
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 5.7e-94 348.2 271 68.3
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 7.4e-94 347.8 263 70.7
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 7.4e-94 347.8 241 74.7
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.6e-93 346.7 270 68.9
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 6.2e-93 344.7 270 67.4
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.1e-92 344.0 261 69.3
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 5.3e-92 341.7 268 68.3
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 5.3e-92 341.7 263 69.6
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 9.0e-92 340.9 263 68.8
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.3e-90 337.0 263 69.2
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 3.8e-90 335.5 272 67.3
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 5.0e-90 335.1 263 68.8
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.2e-88 330.5 272 65.8
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.2e-88 330.5 252 70.2
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.6e-88 330.1 257 67.3
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.5e-86 323.6 218 75.2
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.0e-82 310.8 265 62.3
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.5e-81 306.2 263 65.0
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 2.7e-80 302.8 240 65.0
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 2.5e-78 296.2 269 58.7
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 7.4e-78 294.7 262 61.5
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.3e-74 283.9 189 76.2
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 5.0e-74 282.0 252 61.5
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 7.2e-73 278.1 282 57.4
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.2e-72 277.3 270 58.1
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 2.7e-72 276.2 274 54.0
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 5.7e-70 268.5 179 76.5
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.9e-65 253.4 192 67.7
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 5.5e-65 251.9 239 59.8
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.8e-60 236.9 242 56.6
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 2.3e-55 219.9 150 74.7
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 4.0e-55 219.2 259 46.3
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 3.7e-53 212.6 199 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 9.1e-52 208.0 266 42.5
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 9.1e-52 208.0 261 45.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 3.2e-49 199.5 344 41.0
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 1.8e-47 193.7 225 45.3
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.4e-38 162.9 113 76.1
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.4e-38 162.5 113 75.2
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.7e-37 160.6 131 62.6
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.2e-37 160.2 107 77.6
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 7.0e-36 155.2 142 59.2
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 7.3e-33 145.2 146 56.8
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 6.2e-32 142.1 141 56.0
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 1.0e-31 141.4 84 82.1
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 2.3e-31 140.2 114 67.5
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 5.8e-30 135.6 84 79.8
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.2e-27 127.9 155 47.7
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 3.5e-27 126.3 109 64.2
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.9e-25 120.6 90 68.9
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 2.5e-25 120.2 282 30.9
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 3.3e-25 119.8 111 61.3
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 9.5e-25 118.2 249 31.7
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 6.2e-24 115.5 104 59.6
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.4e-23 114.4 66 81.8
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.1e-20 104.8 116 53.4
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.4e-20 104.4 56 83.9
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 9.2e-20 101.7 69 72.5
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.2e-19 101.3 103 58.3
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 5.1e-18 95.9 56 85.7
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 8.6e-18 95.1 70 68.6
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.5e-17 94.4 69 66.7
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.8e-15 87.4 76 63.2
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.3e-10 71.2 98 43.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 5.1e-10 69.3 82 50.0
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 8.6e-10 68.6 77 53.2
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.2e-07 59.3 56 53.6
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 7.6e-06 55.5 72 45.8


User provided reference genes

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