Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p038305 Quercus lobata HOM05D010926 ORTHO05D011735 1.1e-107 393.3 202 100.0
QL04p038362 Quercus lobata HOM05D010926 ORTHO05D011735 2.2e-74 282.7 160 91.9
Ciclev10006726m.g Citrus clementina HOM05D010926 ORTHO05D011735 2.0e-35 153.3 214 43.0
Ciclev10006601m.g Citrus clementina HOM05D010926 ORTHO05D011735 2.5e-30 136.3 168 47.0
Ciclev10007031m.g Citrus clementina HOM05D010926 ORTHO05D011735 1.6e-24 117.1 96 56.2
Medtr4g027195 Medicago truncatula HOM05D017052 ORTHO05D011735 2.5e-22 109.8 181 38.7
Phvul.010G072200 Phaseolus vulgaris HOM05D017052 ORTHO05D011735 2.5e-22 109.8 157 38.9
Glyma.01G135800 Glycine max HOM05D017052 ORTHO05D011735 3.7e-21 105.9 172 38.4
Rhsim07G0031400 Rhododendron simsii HOM05D010926 ORTHO05D011735 2.5e-17 93.2 164 39.6
TPR.G5040 Trifolium pratense HOM05D017052 ORTHO05D011735 4.2e-17 92.4 177 34.5
Lalb_Chr07g0190261 Lupinus albus HOM05D017052 ORTHO05D011735 5.5e-17 92.0 129 40.3
Potri.014G061133 Populus trichocarpa HOM05D010926 ORTHO05D011735 7.1e-17 91.7 151 39.7
Prupe.2G137400 Prunus persica HOM05D010926 ORTHO05D011735 2.1e-16 90.1 179 35.2
Potri.014G061266 Populus trichocarpa HOM05D010926 ORTHO05D011735 1.0e-15 87.8 212 33.0
Potri.001G135925 Populus trichocarpa HOM05D010926 ORTHO05D011735 1.3e-15 87.4 212 32.5
MD07G1115400 Malus domestica HOM05D010926 ORTHO05D011735 3.0e-15 86.3 176 31.2
arahy.Tifrunner.gnm1.ann1.X8S0CU Arachis hypogaea HOM05D017052 ORTHO05D011735 2.5e-14 83.2 136 38.2
Sabra14G0045000 Salix brachista HOM05D010926 ORTHO05D011735 3.3e-14 82.8 178 33.7
MD02G1210800 Malus domestica HOM05D010926 ORTHO05D011735 7.4e-14 81.6 150 31.3
Sabra14G0045700 Salix brachista HOM05D010926 ORTHO05D011735 7.4e-14 81.6 134 39.6
Actinidia12677 Actinidia chinensis HOM05D027244 ORTHO05D026415 4.1e-12 75.9 177 32.2
Medtr4g027105 Medicago truncatula HOM05D017052 ORTHO05D011735 1.0e-10 71.2 112 40.2
QL01p050041 Quercus lobata HOM05D008848 ORTHO05D008136 1.7e-10 70.5 168 26.8
Medtr4g027225 Medicago truncatula HOM05D017052 ORTHO05D011735 5.0e-10 68.9 112 39.3
Thecc.01G384100 Theobroma cacao HOM05D019503 ORTHO05D010785 8.4e-10 68.2 129 31.8
Dinv06358 Davidia involucrata HOM05D028634 ORTHO05D022500 4.2e-09 65.9 150 30.0
Rhsim07G0111900 Rhododendron simsii HOM05D008848 ORTHO05D008136 7.1e-09 65.1 149 31.5
Rhsim07G0111400 Rhododendron simsii HOM05D008848 ORTHO05D008136 9.3e-09 64.7 118 33.9
Rhsim07G0111800 Rhododendron simsii HOM05D008848 ORTHO05D008136 9.3e-09 64.7 118 35.6
Sabra06G0022800 Salix brachista HOM05D008848 ORTHO05D008136 1.6e-08 63.9 110 32.7
Rhsim07G0111200 Rhododendron simsii HOM05D008848 ORTHO05D008136 2.1e-08 63.5 148 31.8
Rhsim07G0110900 Rhododendron simsii HOM05D008848 ORTHO05D008136 3.5e-08 62.8 118 33.9
Ciclev10003368m.g Citrus clementina HOM05D055733 ORTHO05D011735 4.6e-08 62.4 123 35.8
Rhsim07G0111700 Rhododendron simsii HOM05D008848 ORTHO05D008136 1.0e-07 61.2 180 27.8
Potri.006G034375 Populus trichocarpa HOM05D009287 ORTHO05D008136 1.3e-07 60.8 107 33.6
Potri.006G034450 Populus trichocarpa HOM05D008848 ORTHO05D008136 1.3e-07 60.8 102 32.4
Rhsim07G0111500 Rhododendron simsii HOM05D008848 ORTHO05D008136 1.8e-07 60.5 117 31.6
Thecc.01G384000 Theobroma cacao HOM05D019503 ORTHO05D010785 1.8e-07 60.5 134 26.1
Atru.chr2.3695 Acer truncatum HOM05D010926 ORTHO05D011735 2.3e-07 60.1 103 37.9
QL07p007766 Quercus lobata HOM05D014023 ORTHO05D011719 2.3e-07 60.1 128 34.4
Dinv06361 Davidia involucrata HOM05D028634 ORTHO05D022500 5.1e-07 58.9 131 32.8
Dinv21661 Davidia involucrata HOM05D008848 ORTHO05D008136 5.1e-07 58.9 106 31.1
Manes.12G004101 Manihot esculenta HOM05D008848 ORTHO05D008136 5.1e-07 58.9 103 35.9
Hma1.2p1_0316F.1_g122780 Hydrangea macrophylla HOM05D010926 ORTHO05D008136 6.7e-07 58.5 80 35.0
Ciclev10003779m.g Citrus clementina HOM05D055733 ORTHO05D011735 8.7e-07 58.2 157 31.8
CSS0049534 Camellia sinensis var. sinensis HOM05D027244 ORTHO05D026415 1.1e-06 57.8 113 34.5
Glyma.01G076700 Glycine max HOM05D019503 ORTHO05D010785 1.1e-06 57.8 136 27.2
QL01p050108 Quercus lobata HOM05D008848 ORTHO05D008136 1.5e-06 57.4 120 28.3
QL07p012771 Quercus lobata HOM05D008848 ORTHO05D008136 1.5e-06 57.4 90 38.9
arahy.Tifrunner.gnm1.ann1.3M5ES5 Arachis hypogaea HOM05D019503 ORTHO05D010785 2.5e-06 56.6 113 29.2
Potri.016G032783 Populus trichocarpa HOM05D008848 ORTHO05D008136 2.5e-06 56.6 83 34.9
Prupe.2G180000 Prunus persica HOM05D015530 ORTHO05D008136 2.5e-06 56.6 99 34.3
Rhsim07G0111100 Rhododendron simsii HOM05D009466 ORTHO05D008136 2.5e-06 56.6 108 33.3
Rhsim11G0112600 Rhododendron simsii HOM05D000813 ORTHO05D026093 5.7e-06 55.5 125 31.2
arahy.Tifrunner.gnm1.ann1.R8WE5X Arachis hypogaea HOM05D019503 ORTHO05D010785 7.4e-06 55.1 110 28.2
Haze_02685 Corylus avellana HOM05D014972 ORTHO05D011719 7.4e-06 55.1 133 36.8
Rhsim07G0112300 Rhododendron simsii HOM05D009466 ORTHO05D008136 7.4e-06 55.1 126 28.6
Prupe.2G180300 Prunus persica HOM05D015530 ORTHO05D008136 9.7e-06 54.7 117 31.6


User provided reference genes

Program Settings