Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p037353 Quercus lobata HOM05D004434 ORTHO05D000365 5.7e-65 251.1 163 100.0
QL04p037378 Quercus lobata HOM05D014023 ORTHO05D011719 4.1e-47 191.8 156 88.5
QL04p035929 Quercus lobata HOM05D004434 ORTHO05D000365 3.6e-35 152.1 140 82.9
CiPaw.13G031500 Carya illinoinensis HOM05D004434 ORTHO05D000365 1.7e-24 116.7 116 77.6
Cfa011141 Carpinus fangiana HOM05D004434 ORTHO05D000365 7.0e-23 111.3 117 76.1
Haze_02718 Corylus avellana HOM05D004434 ORTHO05D000365 9.2e-23 110.9 117 73.5
Manes.01G269700 Manihot esculenta HOM05D004434 ORTHO05D000365 2.3e-21 106.3 116 75.0
Sabra02G0111700 Salix brachista HOM05D004434 ORTHO05D000365 1.9e-20 103.2 120 73.3
Gorai.007G088300 Gossypium raimondii HOM05D004434 ORTHO05D000365 4.3e-20 102.1 124 60.5
RcHm_v2.0_Chr1g0348781 Rosa chinensis HOM05D004434 ORTHO05D000365 9.5e-20 100.9 120 75.0
MD07G1113200 Malus domestica HOM05D004434 ORTHO05D000365 1.6e-19 100.1 118 73.7
Potri.002G143300 Populus trichocarpa HOM05D004434 ORTHO05D000365 2.8e-19 99.4 126 67.5
Duzib133G0507 Durio zibethinus HOM05D004434 ORTHO05D000365 8.0e-19 97.8 119 74.8
Nn6g33946 Nelumbo nucifera HOM05D004434 ORTHO05D000365 8.0e-19 97.8 116 69.8
Duzib138G1022 Durio zibethinus HOM05D004434 ORTHO05D000365 1.0e-18 97.4 123 74.0
Glyma.11G166128 Glycine max HOM05D004434 ORTHO05D000365 1.0e-18 97.4 126 73.0
Nn1g00983 Nelumbo nucifera HOM05D004434 ORTHO05D000365 1.8e-18 96.7 129 63.6
Dinv44112 Davidia involucrata HOM05D004434 ORTHO05D000365 2.3e-18 96.3 118 71.2
Sabra14G0046500 Salix brachista HOM05D004434 ORTHO05D000365 2.3e-18 96.3 119 73.1
Thecc.01G385200 Theobroma cacao HOM05D004434 ORTHO05D000365 4.0e-18 95.5 117 71.8
Lj1g0013991 Lotus japonicus HOM05D004434 ORTHO05D000365 5.2e-18 95.1 122 59.8
Glyma.01G076900 Glycine max HOM05D004434 ORTHO05D000365 6.8e-18 94.7 127 69.3
COL.COLO4_12473 Corchorus olitorius HOM05D004434 ORTHO05D000365 1.5e-17 93.6 121 69.4
Gohir.D11G082600 Gossypium hirsutum HOM05D004434 ORTHO05D000365 1.5e-17 93.6 120 62.5
Cc02_g24640 Coffea canephora HOM05D004434 ORTHO05D000365 2.0e-17 93.2 117 71.8
CiPaw.14G024800 Carya illinoinensis HOM05D004434 ORTHO05D000365 2.6e-17 92.8 133 69.2
ClCG06G002970 Citrullus lanatus HOM05D004434 ORTHO05D000365 3.4e-17 92.4 130 60.8
Manes.05G049900 Manihot esculenta HOM05D004434 ORTHO05D000365 3.4e-17 92.4 117 57.3
Phvul.008G144300 Phaseolus vulgaris HOM05D004434 ORTHO05D000365 5.8e-17 91.7 122 70.5
TWI14G0925 Tripterygium wilfordii HOM05D004434 ORTHO05D000365 1.3e-16 90.5 131 64.1
TPR.G39043 Trifolium pratense HOM05D004434 ORTHO05D000365 1.7e-16 90.1 126 68.3
Ciclev10020053m.g Citrus clementina HOM05D004434 ORTHO05D000365 2.2e-16 89.7 125 69.6
Gohir.A11G078200 Gossypium hirsutum HOM05D004434 ORTHO05D000365 2.2e-16 89.7 122 71.3
Rhsim07G0032300 Rhododendron simsii HOM05D004434 ORTHO05D000365 3.7e-16 89.0 119 63.9
Atru.chr5.222 Acer truncatum HOM05D004434 ORTHO05D000365 4.9e-16 88.6 119 72.3
GSVIVG01018165001 Vitis vinifera HOM05D004434 ORTHO05D000365 1.9e-15 86.7 118 65.3
Hma1.2p1_0301F.1_g118230 Hydrangea macrophylla HOM05D004434 ORTHO05D000365 3.2e-15 85.9 135 61.5
CSS0014185 Camellia sinensis var. sinensis HOM05D004434 ORTHO05D000365 7.0e-15 84.7 126 68.3
Lalb_Chr01g0021481 Lupinus albus HOM05D004434 ORTHO05D000365 7.0e-15 84.7 122 64.8
Psat3g156680 Pisum sativum HOM05D004434 ORTHO05D000365 9.2e-15 84.3 129 65.9
Potri.014G066500 Populus trichocarpa HOM05D004434 ORTHO05D000365 9.2e-15 84.3 118 70.3
TAR629G0313 Trochodendron aralioides HOM05D004434 ORTHO05D000365 9.2e-15 84.3 117 71.8
FvH4_7g10840 Fragaria vesca HOM05D004434 ORTHO05D000365 3.5e-14 82.4 122 65.6
FAN06G0262 Fragaria x ananassa HOM05D004434 ORTHO05D000365 3.5e-14 82.4 122 65.6
FAN06G1690 Fragaria x ananassa HOM05D004434 ORTHO05D000365 3.5e-14 82.4 122 65.6
arahy.Tifrunner.gnm1.ann1.F2RES5 Arachis hypogaea HOM05D004434 ORTHO05D000365 4.6e-14 82.0 132 64.4
FAN03G0453 Fragaria x ananassa HOM05D004434 ORTHO05D000365 7.8e-14 81.3 119 66.4
Eucgr.D02499 Eucalyptus grandis HOM05D004434 ORTHO05D000365 1.0e-13 80.9 131 53.4
FAN10G1781 Fragaria x ananassa HOM05D004434 ORTHO05D000365 1.0e-13 80.9 128 62.5
arahy.Tifrunner.gnm1.ann1.XPK4NL Arachis hypogaea HOM05D004434 ORTHO05D000365 1.3e-13 80.5 132 63.6
FAN10G0381 Fragaria x ananassa HOM05D004434 ORTHO05D000365 1.3e-13 80.5 128 62.5
MSTRG.4915 Avicennia marina HOM05D004434 ORTHO05D000365 2.3e-13 79.7 128 45.3
CANSAT21G1995 Cannabis sativa HOM05D004434 ORTHO05D000365 6.6e-13 78.2 124 59.7
Ca_27604_v3 Cicer arietinum L. HOM05D004434 ORTHO05D000365 6.6e-13 78.2 128 65.6
Gorai.008G106900 Gossypium raimondii HOM05D004434 ORTHO05D000365 1.1e-12 77.4 118 48.3
Nitab4.5_0000706g0090 Nicotiana tabacum HOM05D004434 ORTHO05D000365 1.5e-12 77.0 126 62.7
Lj9C564T0 Lonicera japonica HOM05D004434 ORTHO05D000365 1.9e-12 76.6 106 64.2
Peaxi162Scf00377g00029 Petunia axillaris HOM05D004434 ORTHO05D000365 1.9e-12 76.6 120 62.5
Actinidia33486 Actinidia chinensis HOM05D004434 ORTHO05D000365 5.6e-12 75.1 122 62.3
DCAR_025094 Daucus carota HOM05D004434 ORTHO05D000365 1.2e-11 73.9 122 59.8
Sed0003684 Sechium edule HOM05D004434 ORTHO05D000365 1.6e-11 73.6 136 41.9
Solyc01g090790.4 Solanum lycopersicum HOM05D004434 ORTHO05D000365 2.1e-11 73.2 120 62.5
Sopen01g036520 Solanum pennellii HOM05D004434 ORTHO05D000365 2.1e-11 73.2 120 62.5
CSS0021988 Camellia sinensis var. sinensis HOM05D004434 ORTHO05D000365 4.7e-11 72.0 119 65.5
CARHR248100 Cardamine hirsuta HOM05D004434 ORTHO05D000365 6.2e-11 71.6 122 52.5
PGSC0003DMG400025976 Solanum tuberosum HOM05D004434 ORTHO05D000365 6.2e-11 71.6 121 60.3
MBI04_g09506_MAGBIO Magnolia biondii HOM05D004434 ORTHO05D000365 1.1e-10 70.9 123 63.4
Nitab4.5_0001026g0100 Nicotiana tabacum HOM05D004434 ORTHO05D000365 1.1e-10 70.9 131 58.0
vmacro13455 Vaccinium macrocarpon HOM05D004434 ORTHO05D000365 1.8e-10 70.1 113 64.6
Aqoxy5G03868 Aquilegia oxysepala HOM05D004434 ORTHO05D000365 2.3e-10 69.7 120 64.2
CsaV3_6G009090 Cucumis sativus L. HOM05D004434 ORTHO05D000365 2.3e-10 69.7 129 54.3
Actinidia12178 Actinidia chinensis HOM05D004434 ORTHO05D000365 3.1e-10 69.3 131 51.1
ATR0317G093 Amborella trichopoda HOM05D004434 ORTHO05D000365 3.1e-10 69.3 127 58.3
MELO3C022233.2 Cucumis melo HOM05D004434 ORTHO05D000365 3.1e-10 69.3 131 55.0
HanXRQChr03g0093291 Helianthus annuus HOM05D004434 ORTHO05D000365 4.0e-10 68.9 134 57.5
Lsat_1_v5_gn_3_129041 Lactuca sativa HOM05D004434 ORTHO05D000365 6.8e-10 68.2 128 58.6
AL6G53460 Arabidopsis lyrata HOM05D004434 ORTHO05D000365 1.2e-09 67.4 127 61.4
MSTRG.28173 Avicennia marina HOM05D000627 ORTHO05D000365 1.2e-09 67.4 113 50.4
C03p39300 Brassica napus HOM05D004434 ORTHO05D000365 2.0e-09 66.6 126 57.9
AT4G00050 Arabidopsis thaliana HOM05D004434 ORTHO05D000365 2.6e-09 66.2 124 60.5
A03p27120 Brassica napus HOM05D004434 ORTHO05D000365 3.4e-09 65.9 126 57.9
THA.LOC104801484 Tarenaya hassleriana HOM05D004434 ORTHO05D000365 4.4e-09 65.5 116 50.0
A03p32250 Brassica napus HOM05D004434 ORTHO05D000365 5.8e-09 65.1 126 57.1
BraA03t12395Z Brassica rapa HOM05D004434 ORTHO05D000365 5.8e-09 65.1 126 57.1
CDE11G0949 Ceratophyllum demersum HOM05D004434 ORTHO05D000365 7.5e-09 64.7 123 52.0
Oeu000035.2 Olea europaea HOM05D004434 ORTHO05D000365 1.3e-08 63.9 121 42.1
VMungo0720G1368 Vigna mungo HOM05D003220 ORTHO05D000365 1.3e-08 63.9 64 53.1
BcaB01g02182 Brassica carinata HOM05D004434 ORTHO05D000365 1.7e-08 63.5 126 55.6
Thhalv10028687m.g Eutrema salsugineum HOM05D004434 ORTHO05D000365 1.7e-08 63.5 128 57.0
HanXRQChr13g0422911 Helianthus annuus HOM05D004434 ORTHO05D000365 2.2e-08 63.2 130 47.7
BcaC01g06888 Brassica carinata HOM05D004434 ORTHO05D000365 4.9e-08 62.0 125 56.0
BolC3t16201H Brassica oleracea HOM05D004434 ORTHO05D000365 4.9e-08 62.0 125 56.0
Cpa.g.sc212.3 Carica papaya HOM05D000627 ORTHO05D000365 1.1e-07 60.8 116 58.6
EL10Ac1g00826 Beta vulgaris HOM05D004434 ORTHO05D000365 1.4e-07 60.5 130 59.2
BcaC04g24205 Brassica carinata HOM05D004434 ORTHO05D000365 1.4e-07 60.5 123 57.7
BolC9t52944H Brassica oleracea HOM05D004434 ORTHO05D000365 1.4e-07 60.5 123 56.9
BraA03t11925Z Brassica rapa HOM05D004434 ORTHO05D000365 1.9e-07 60.1 126 56.3
Sp6g00110 Schrenkiella parvula HOM05D004434 ORTHO05D000365 5.4e-07 58.5 129 61.2
BcaC01g04892 Brassica carinata HOM05D004434 ORTHO05D000365 7.1e-07 58.2 126 54.8
C03p32580 Brassica napus HOM05D004434 ORTHO05D000365 7.1e-07 58.2 126 54.8
BolC3t15597H Brassica oleracea HOM05D004434 ORTHO05D000365 7.1e-07 58.2 126 54.8
Migut.N01772 Erythranthe guttata HOM05D004434 ORTHO05D000365 7.1e-07 58.2 127 49.6
A09p00770 Brassica napus HOM05D004434 ORTHO05D000365 1.2e-06 57.4 126 56.3
C09p00090 Brassica napus HOM05D004434 ORTHO05D000365 1.2e-06 57.4 126 56.3
BraA09t35683Z Brassica rapa HOM05D004434 ORTHO05D000365 1.2e-06 57.4 126 56.3
HPP92_022321 Vanilla planifolia HOM05D000627 ORTHO05D000365 1.2e-06 57.4 124 35.5
Zm00001eb023350 Zea mays HOM05D000627 ORTHO05D000365 1.2e-06 57.4 120 55.8
ECA236G3114 Erigeron canadensis HOM05D004434 ORTHO05D000365 1.6e-06 57.0 116 54.3
HPP92_022329 Vanilla planifolia HOM05D000627 ORTHO05D000365 2.1e-06 56.6 124 34.7
CDE09G0972 Ceratophyllum demersum HOM05D004434 ORTHO05D000365 2.7e-06 56.2 119 37.0
Sc02g0002850 Simmondsia chinensis HOM05D004434 ORTHO05D000365 6.0e-06 55.1 140 56.4
ECA240G3600 Erigeron canadensis HOM05D004434 ORTHO05D000365 7.8e-06 54.7 130 56.2
Peaxi162Scf00441g00317 Petunia axillaris HOM05D004434 ORTHO05D000365 7.8e-06 54.7 111 37.8


User provided reference genes

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