Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 0.0e+00 1236.1 708 100.0
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 0.0e+00 1120.1 696 94.0
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 4.1e-229 798.5 482 93.8
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 8.8e-155 551.6 670 56.0
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 2.6e-138 496.9 469 65.7
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 6.6e-134 482.3 448 66.3
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 3.4e-114 416.8 400 64.5
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 1.1e-107 395.2 669 46.0
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 8.9e-107 392.1 689 41.8
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.8e-103 379.0 538 51.7
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.8e-103 379.0 517 51.5
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.0e-102 377.1 507 52.9
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.9e-102 376.7 497 50.3
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 6.6e-102 375.9 687 44.1
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 1.1e-101 375.2 689 46.3
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.9e-101 374.4 504 54.0
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 2.1e-100 370.9 703 41.1
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.1e-100 369.0 526 51.5
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 1.8e-99 367.9 650 42.9
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 3.2e-96 357.1 467 49.3
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 2.7e-95 354.0 511 47.4
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 1.4e-88 331.6 473 49.0
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 2.7e-87 327.4 661 40.2
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 7.9e-87 325.9 451 48.6
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.0e-86 325.5 478 47.3
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.3e-84 318.5 436 48.4
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 1.3e-81 308.5 478 46.2
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 2.9e-73 280.8 479 42.6
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 6.5e-73 279.6 479 44.9
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 6.9e-67 259.6 616 38.5
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 5.0e-65 253.4 598 38.1
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 3.0e-62 244.2 451 41.9
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 3.3e-61 240.7 472 37.9
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 8.2e-60 236.1 447 40.0
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 1.4e-56 225.3 485 37.7
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 1.9e-56 224.9 369 46.6
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 3.2e-56 224.2 477 38.4
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 9.4e-56 222.6 507 37.1
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 1.6e-55 221.9 450 38.9
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 6.1e-55 219.9 361 46.3
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 3.0e-54 217.6 488 38.7
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 1.1e-53 215.7 422 39.8
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 1.5e-53 215.3 424 39.6
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 4.8e-52 210.3 444 39.2
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 4.8e-52 210.3 401 40.4
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 1.4e-51 208.8 469 39.0
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.4e-51 208.0 288 47.2
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 3.1e-51 207.6 464 39.2
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 7.0e-51 206.5 451 37.3
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 1.6e-50 205.3 448 37.9
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 4.5e-50 203.8 464 38.1
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 1.3e-49 202.2 300 42.7
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 1.3e-49 202.2 314 44.3
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.3e-49 202.2 316 43.7
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 2.9e-49 201.1 495 38.2
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 3.8e-49 200.7 451 38.4
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 8.5e-49 199.5 284 46.1
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 1.5e-48 198.7 434 37.8
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 3.2e-48 197.6 467 36.8
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 1.6e-47 195.3 390 36.4
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 1.8e-46 191.8 549 36.4
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 3.3e-45 187.6 413 35.4
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.6e-42 178.7 449 37.2
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 3.8e-41 174.1 470 34.3
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 1.5e-40 172.2 455 36.5
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 2.5e-40 171.4 525 34.7
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 9.4e-40 169.5 281 42.7
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 9.4e-40 169.5 488 31.8
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 2.3e-38 164.9 574 33.3
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 6.8e-38 163.3 396 36.6
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 5.7e-37 160.2 330 40.6
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 2.8e-36 157.9 279 41.6
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 3.7e-36 157.5 254 40.2
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 1.8e-35 155.2 372 34.1
QL04p036093 Quercus lobata HOM05D006954 ORTHO05D002099 3.1e-35 154.5 140 75.7
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 9.1e-35 152.9 502 31.5
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 1.6e-34 152.1 556 35.1
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 2.0e-34 151.8 325 37.2
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 1.3e-33 149.1 325 39.1
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 2.9e-33 147.9 286 36.0
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 5.0e-33 147.1 268 38.1
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 1.5e-32 145.6 443 33.9
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 5.5e-32 143.7 284 36.6
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 7.2e-32 143.3 314 36.6
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 9.5e-32 142.9 281 37.0
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 4.0e-30 137.5 247 36.0
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 7.0e-27 126.7 211 41.2
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 2.0e-26 125.2 202 39.1
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 2.7e-26 124.8 451 29.5
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 3.8e-25 120.9 286 33.9
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 1.9e-24 118.6 297 38.4
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 4.3e-24 117.5 279 33.7
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 9.5e-24 116.3 210 37.6
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 9.5e-24 116.3 210 37.6
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 2.1e-23 115.2 409 35.5
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 2.1e-23 115.2 327 33.0
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 8.0e-23 113.2 213 36.6
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 1.8e-22 112.1 331 32.9
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 4.0e-22 110.9 198 37.4
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 5.2e-22 110.5 328 32.9
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 4.4e-21 107.5 293 32.8
Haze_02713 Corylus avellana HOM05D001088 ORTHO05D002099 2.2e-20 105.1 134 53.0
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.9e-20 104.0 308 31.5
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 4.9e-20 104.0 215 34.0
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 8.3e-20 103.2 312 30.4
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.1e-19 102.8 308 29.2
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.8e-19 102.1 309 30.1
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 9.2e-19 99.8 85 55.3
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.6e-18 99.0 309 30.1
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 1.5e-16 92.4 239 34.7
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 2.3e-14 85.1 108 41.7
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 6.8e-14 83.6 210 32.4
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 2.0e-13 82.0 86 45.3
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 4.4e-13 80.9 85 44.7
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 7.5e-13 80.1 190 37.4
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 1.3e-12 79.3 257 27.6
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 2.0e-10 72.0 186 29.6
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 2.7e-10 71.6 352 27.0
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.5e-08 65.9 185 26.5
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 3.6e-07 61.2 185 25.9
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 3.6e-07 61.2 186 28.0
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 6.2e-07 60.5 188 26.6
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 8.1e-07 60.1 187 27.8
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.1e-06 59.7 187 25.7
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.8e-06 58.9 198 26.3
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 2.3e-06 58.5 189 27.0
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.3e-06 58.5 185 22.2
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 2.3e-06 58.5 202 24.8
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 3.1e-06 58.2 184 25.5
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 3.1e-06 58.2 186 25.8
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 3.1e-06 58.2 191 27.2
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 4.0e-06 57.8 186 24.2
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 5.2e-06 57.4 189 31.2
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 5.2e-06 57.4 186 25.3
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 6.8e-06 57.0 186 23.7
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 6.8e-06 57.0 198 26.3
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 6.8e-06 57.0 188 27.7
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 6.8e-06 57.0 185 22.7
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 8.9e-06 56.6 190 23.2


User provided reference genes

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