Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 3.7e-245 851.3 481 100.0
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 1.8e-228 795.8 482 93.8
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 3.1e-228 795.0 482 94.6
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 4.6e-139 498.8 469 65.7
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 1.6e-136 490.3 470 65.5
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 6.5e-133 478.4 448 66.1
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 6.9e-111 405.2 391 64.7
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 3.2e-108 396.4 484 51.2
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 3.3e-105 386.3 455 54.1
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.2e-104 381.7 496 51.4
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 1.8e-103 380.6 503 54.5
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 3.1e-103 379.8 493 50.9
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.0e-101 374.8 516 50.2
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.2e-101 373.6 537 48.4
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.9e-100 370.5 520 49.0
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.1e-99 367.1 517 48.9
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 3.3e-97 359.8 506 47.2
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.3e-97 359.8 525 47.8
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 5.7e-97 359.0 447 52.6
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 2.2e-96 357.1 467 50.7
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 4.8e-96 355.9 462 49.6
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 7.2e-92 342.0 473 50.3
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 1.5e-89 334.3 505 47.1
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.5e-89 334.3 473 48.4
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 7.0e-87 325.5 473 49.3
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 2.0e-86 323.9 448 48.4
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 3.2e-84 316.6 468 47.4
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 4.7e-75 286.2 471 45.6
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 6.8e-74 282.3 468 43.8
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 3.5e-70 270.0 446 44.8
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 3.9e-69 266.5 494 42.3
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 5.4e-63 246.1 449 41.9
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 6.0e-62 242.7 467 38.1
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 1.9e-60 237.7 417 41.7
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 5.2e-58 229.6 446 42.4
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 2.0e-57 227.6 416 41.6
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 7.5e-57 225.7 473 40.0
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 9.8e-57 225.3 443 38.8
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 3.7e-56 223.4 417 40.0
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 7.1e-55 219.2 403 40.0
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 1.6e-54 218.0 353 44.5
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 2.1e-54 217.6 435 40.0
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 4.6e-54 216.5 303 48.2
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 7.8e-54 215.7 413 42.1
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 3.0e-53 213.8 448 38.8
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 3.0e-53 213.8 302 44.0
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 3.9e-53 213.4 473 38.1
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 5.1e-53 213.0 474 38.4
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 5.1e-53 213.0 473 38.3
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.5e-52 211.5 313 45.7
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 4.3e-52 209.9 362 42.0
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 7.3e-52 209.1 470 36.4
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 9.5e-52 208.8 450 37.8
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 1.2e-51 208.4 446 38.3
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 1.2e-51 208.4 330 43.9
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 2.1e-51 207.6 316 45.3
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.1e-50 205.3 488 36.5
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 1.4e-50 204.9 414 40.3
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 3.4e-49 200.3 298 45.3
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 5.8e-49 199.5 379 40.6
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 3.7e-48 196.8 409 36.9
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 1.2e-46 191.8 460 34.6
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 2.7e-46 190.7 401 39.2
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 4.7e-43 179.9 322 37.6
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 2.4e-42 177.6 281 44.1
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 3.1e-42 177.2 455 38.0
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.0e-41 174.5 306 45.4
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 4.4e-41 173.3 461 35.1
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 7.1e-39 166.0 348 37.4
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 1.2e-38 165.2 348 37.9
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 6.0e-38 162.9 371 34.8
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 3.0e-37 160.6 387 36.4
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.1e-36 158.7 319 39.2
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 5.6e-36 156.4 293 42.0
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 2.1e-35 154.5 341 35.8
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 3.6e-35 153.7 347 36.9
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 4.8e-35 153.3 325 37.8
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 5.3e-34 149.8 271 38.0
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 9.0e-34 149.1 309 38.8
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 1.5e-33 148.3 324 37.3
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 1.5e-33 148.3 334 36.8
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 1.3e-32 145.2 286 35.3
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 6.4e-32 142.9 307 36.5
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 7.1e-31 139.4 305 33.8
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 6.0e-30 136.3 187 44.4
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 9.6e-28 129.0 320 33.4
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 1.8e-26 124.8 278 36.0
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 4.0e-26 123.6 202 39.1
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 9.0e-26 122.5 297 40.1
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 5.8e-25 119.8 276 33.7
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 1.7e-24 118.2 274 33.6
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 1.7e-24 118.2 350 32.6
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 2.2e-24 117.9 210 37.1
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 2.2e-24 117.9 210 37.1
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 3.8e-24 117.1 331 33.5
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 8.4e-24 115.9 330 33.6
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 1.4e-23 115.2 323 33.1
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 5.5e-23 113.2 207 36.7
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.0e-22 109.8 307 32.6
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 1.8e-21 108.2 319 32.9
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.1e-21 106.7 310 32.6
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.4e-20 102.8 319 32.3
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 2.1e-19 101.3 183 45.4
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 3.7e-19 100.5 211 34.1
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 4.8e-19 100.1 291 33.0
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 6.2e-19 99.8 85 55.3
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 6.9e-18 96.3 314 29.0
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 1.3e-16 92.0 232 36.2
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 2.1e-14 84.7 198 34.3
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 6.0e-14 83.2 101 41.6
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 1.3e-13 82.0 86 45.3
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 3.9e-13 80.5 85 44.7
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 3.3e-12 77.4 190 35.8
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 1.3e-11 75.5 359 28.4
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 2.1e-11 74.7 186 30.1
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 1.2e-09 68.9 358 25.7
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 2.0e-09 68.2 185 27.0
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 3.8e-08 63.9 185 26.5
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 6.5e-08 63.2 187 28.9
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 8.4e-08 62.8 186 28.5
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 1.4e-07 62.0 191 28.3
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.9e-07 61.6 188 26.6
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 3.2e-07 60.8 186 25.3
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 3.2e-07 60.8 186 26.9
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 5.5e-07 60.1 187 27.3
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 5.5e-07 60.1 185 22.7
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 5.5e-07 60.1 185 23.8
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 9.3e-07 59.3 191 25.7
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.2e-06 58.9 186 24.2
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 1.2e-06 58.9 189 28.0
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 1.2e-06 58.9 202 24.8
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.6e-06 58.5 190 27.9
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 1.6e-06 58.5 186 25.8
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 2.1e-06 58.2 189 27.0
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 2.7e-06 57.8 186 26.3
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 3.5e-06 57.4 198 27.3
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 3.5e-06 57.4 195 25.6
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 3.5e-06 57.4 186 23.7
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 4.6e-06 57.0 191 31.4
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 6.1e-06 56.6 188 25.0
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 6.1e-06 56.6 198 25.8
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 6.1e-06 56.6 185 24.3
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 7.9e-06 56.2 190 25.8


User provided reference genes

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