Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 2.1e-109 399.1 201 100.0
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 2.7e-56 222.6 118 92.4
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 5.9e-56 221.5 122 91.8
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 2.5e-54 216.1 116 90.5
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.2e-53 213.8 117 87.2
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 1.2e-53 213.8 117 87.2
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 2.8e-53 212.6 117 87.2
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.0e-52 210.7 119 85.7
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 3.1e-52 209.1 117 86.3
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 3.1e-52 209.1 117 84.6
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 4.0e-52 208.8 117 84.6
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 4.0e-52 208.8 117 84.6
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 5.2e-52 208.4 117 84.6
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 2.6e-51 206.1 117 82.1
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 4.4e-51 205.3 117 83.8
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 7.5e-51 204.5 119 83.2
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 7.5e-51 204.5 117 82.1
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 9.8e-51 204.1 117 83.8
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 1.3e-50 203.8 117 82.1
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.7e-50 203.4 117 83.8
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.7e-50 203.4 117 82.9
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.2e-50 203.0 124 79.8
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 3.7e-50 202.2 117 84.6
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 4.9e-50 201.8 117 82.9
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 8.3e-50 201.1 117 82.1
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.4e-49 200.3 116 83.6
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.4e-49 199.5 116 83.6
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 3.2e-49 199.1 122 78.7
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 4.1e-49 198.7 117 80.3
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 5.4e-49 198.4 116 81.9
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.4e-49 198.4 116 81.9
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.4e-49 198.4 116 81.9
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 5.4e-49 198.4 116 81.9
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.0e-48 196.4 116 81.9
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 2.0e-48 196.4 116 81.0
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.0e-48 196.4 116 81.0
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 3.5e-48 195.7 118 78.8
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 4.6e-48 195.3 116 81.0
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 4.6e-48 195.3 116 80.2
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 7.8e-48 194.5 116 81.0
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 7.8e-48 194.5 116 80.2
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 7.8e-48 194.5 116 81.0
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 7.8e-48 194.5 116 81.0
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.0e-47 194.1 117 77.8
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.1e-46 190.7 116 80.2
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.9e-46 189.9 112 82.1
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 4.3e-46 188.7 117 76.9
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 4.3e-46 188.7 117 76.9
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 4.3e-46 188.7 117 76.9
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 9.5e-46 187.6 116 78.4
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 1.2e-45 187.2 117 76.1
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.2e-45 187.2 117 77.8
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.2e-45 187.2 117 78.6
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.2e-45 187.2 116 75.9
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.2e-45 187.2 116 76.7
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 1.6e-45 186.8 116 77.6
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 1.6e-45 186.8 116 76.7
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 2.1e-45 186.4 117 76.9
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 2.1e-45 186.4 116 75.0
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 2.8e-45 186.0 116 77.6
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 2.8e-45 186.0 116 77.6
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 4.7e-45 185.3 117 75.2
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 4.7e-45 185.3 117 75.2
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 4.7e-45 185.3 117 75.2
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 6.2e-45 184.9 116 80.2
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 1.1e-44 184.1 118 77.1
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.4e-44 183.7 140 67.9
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 1.4e-44 183.7 112 77.7
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.4e-44 183.7 116 76.7
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 2.3e-44 183.0 138 65.9
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 3.1e-44 182.6 116 77.6
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 6.8e-44 181.4 116 73.3
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 6.8e-44 181.4 116 75.9
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.2e-43 180.6 116 74.1
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.2e-43 180.6 118 73.7
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 1.2e-43 180.6 116 74.1
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.5e-43 180.3 116 78.4
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 2.0e-43 179.9 117 73.5
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.0e-43 179.9 118 72.9
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 2.0e-43 179.9 116 74.1
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 2.0e-43 179.9 116 76.7
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 4.4e-43 178.7 118 72.9
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.3e-42 177.2 91 94.5
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.7e-42 176.8 117 74.4
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 2.2e-42 176.4 117 75.2
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 2.9e-42 176.0 113 75.2
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.9e-42 175.3 116 68.1
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 8.3e-42 174.5 116 66.4
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 3.3e-38 162.5 95 80.0
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 7.3e-38 161.4 89 83.1
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.1e-36 157.5 116 65.5
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.8e-36 156.8 142 57.7
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 1.8e-36 156.8 90 81.1
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 4.0e-36 155.6 116 64.7
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 8.9e-36 154.5 116 63.8
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.2e-35 154.1 117 65.0
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.5e-35 153.7 115 66.1
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.5e-35 153.7 116 62.9
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.5e-35 153.7 116 62.9
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.3e-34 150.6 116 63.8
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.3e-34 150.6 116 63.8
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-34 150.6 173 46.8
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.7e-34 150.2 89 76.4
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.9e-34 149.4 114 64.9
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 6.4e-34 148.3 89 74.2
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.1e-33 147.5 116 62.9
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 4.1e-33 145.6 116 60.3
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 5.4e-33 145.2 116 60.3
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.4e-33 145.2 173 45.7
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 7.1e-33 144.8 116 59.5
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 7.1e-33 144.8 116 59.5
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.2e-33 144.4 117 59.8
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 9.2e-33 144.4 89 75.3
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.6e-32 143.7 166 46.4
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 6.0e-32 141.7 116 59.5
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 7.8e-32 141.4 151 47.0
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 2.3e-31 139.8 172 44.2
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 3.9e-31 139.0 88 72.7
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 3.9e-31 139.0 131 58.8
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.1e-30 137.5 116 56.9
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 9.5e-30 134.4 88 68.2
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 2.8e-29 132.9 138 47.8
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 4.0e-28 129.0 116 53.4
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 8.9e-28 127.9 90 70.0
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 2.4e-25 119.8 58 91.4
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.6e-24 117.1 76 65.8
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 5.1e-23 112.1 71 71.8
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.6e-22 108.6 161 41.6
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.1e-20 104.4 99 54.5
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 2.6e-19 99.8 116 46.6
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 3.8e-18 95.9 116 44.0
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 6.4e-18 95.1 116 46.6
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 1.9e-17 93.6 75 66.7
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.9e-17 93.6 72 55.6
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 2.4e-17 93.2 75 65.3
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 7.8e-16 88.2 54 79.6
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.9e-15 85.9 89 53.9
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.1e-14 84.3 93 51.6
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.1e-14 84.3 59 66.1
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 3.6e-13 79.3 98 44.9
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.2e-11 74.3 58 58.6
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 5.8e-11 72.0 48 77.1
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 9.9e-11 71.2 82 43.9
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.9e-10 68.9 66 59.1
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.2e-09 65.9 52 50.0
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.9e-07 59.3 42 73.8
QL02p062220 Quercus lobata HOM05D000004 ORTHO05D000002 8.7e-07 58.2 42 66.7
QL05p044227 Quercus lobata HOM05D000004 ORTHO05D000002 8.7e-07 58.2 42 66.7
QL05p084077 Quercus lobata HOM05D000004 ORTHO05D000002 8.7e-07 58.2 42 66.7
QL12p028861 Quercus lobata HOM05D000004 ORTHO05D000002 8.7e-07 58.2 42 66.7
QL93p0053_0688 Quercus lobata HOM05D000004 ORTHO05D000002 8.7e-07 58.2 42 66.7
QL05p061522 Quercus lobata HOM05D000004 ORTHO05D000002 1.9e-06 57.0 36 75.0
QL02p103579 Quercus lobata HOM05D000004 ORTHO05D000002 2.5e-06 56.6 42 64.3
QL03p069728 Quercus lobata HOM05D000004 ORTHO05D000002 2.5e-06 56.6 55 56.4
QL04p062382 Quercus lobata HOM05D000004 ORTHO05D000002 2.5e-06 56.6 55 56.4
QL04p063674 Quercus lobata HOM05D000004 ORTHO05D000002 2.5e-06 56.6 55 56.4
QL09p002786 Quercus lobata HOM05D000004 ORTHO05D000002 2.5e-06 56.6 55 56.4
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 2.5e-06 56.6 55 56.4
QL05p006270 Quercus lobata HOM05D000004 ORTHO05D000002 3.3e-06 56.2 55 54.5
QL05p022806 Quercus lobata HOM05D000004 ORTHO05D000002 3.3e-06 56.2 55 54.5
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 4.3e-06 55.8 26 84.6
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 4.3e-06 55.8 37 75.7


User provided reference genes

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