Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p034856 Quercus lobata HOM05D006089 ORTHO05D007345 1.1e-78 296.6 147 100.0
Cfa011118 Carpinus fangiana HOM05D006089 ORTHO05D007345 2.0e-21 106.3 97 52.6
CiPaw.13G030000 Carya illinoinensis HOM05D006089 ORTHO05D007345 2.3e-20 102.8 67 68.7
QL04p034802 Quercus lobata HOM05D006089 ORTHO05D007345 2.9e-20 102.4 82 59.8
PGR042G2976 Punica granatum HOM05D006089 ORTHO05D007345 6.6e-20 101.3 88 55.7
TAR352G0004 Trochodendron aralioides HOM05D006089 ORTHO05D007345 7.2e-19 97.8 50 84.0
Atru.chr3.878 Acer truncatum HOM05D006089 ORTHO05D007345 1.6e-18 96.7 67 64.2
TWI14G0524 Tripterygium wilfordii HOM05D006089 ORTHO05D007345 2.1e-18 96.3 65 67.7
Dinv44096 Davidia involucrata HOM05D006089 ORTHO05D007345 2.8e-18 95.9 93 52.7
Sabra14G0041400 Salix brachista HOM05D006089 ORTHO05D007345 3.6e-18 95.5 68 63.2
FvH4_7g10450 Fragaria vesca HOM05D006089 ORTHO05D007345 4.7e-18 95.1 82 52.4
FAN06G0349 Fragaria x ananassa HOM05D006089 ORTHO05D007345 4.7e-18 95.1 82 52.4
FAN06G2506 Fragaria x ananassa HOM05D006089 ORTHO05D007345 4.7e-18 95.1 82 52.4
RcHm_v2.0_Chr1g0348201 Rosa chinensis HOM05D006089 ORTHO05D007345 4.7e-18 95.1 82 53.7
Duzib138G0106 Durio zibethinus HOM05D006089 ORTHO05D007345 6.1e-18 94.7 48 87.5
Prupe.2G133900 Prunus persica HOM05D006089 ORTHO05D007345 6.1e-18 94.7 66 65.2
RcHm_v2.0_Chr1g0348171 Rosa chinensis HOM05D006089 ORTHO05D007345 6.1e-18 94.7 67 64.2
FAN01G0243 Fragaria x ananassa HOM05D006089 ORTHO05D007345 1.0e-17 94.0 82 52.4
Haze_02744 Corylus avellana HOM05D006089 ORTHO05D007345 1.4e-17 93.6 64 65.6
Sed0027986 Sechium edule HOM05D006089 ORTHO05D007345 1.4e-17 93.6 67 62.7
Gohir.A12G096200 Gossypium hirsutum HOM05D006089 ORTHO05D007345 2.3e-17 92.8 48 83.3
Phvul.008G152801 Phaseolus vulgaris HOM05D006089 ORTHO05D007345 2.3e-17 92.8 83 49.4
Glyma.01G073200 Glycine max HOM05D006089 ORTHO05D007345 3.0e-17 92.4 94 47.9
Gohir.D12G098900 Gossypium hirsutum HOM05D006089 ORTHO05D007345 3.0e-17 92.4 48 83.3
Gorai.008G107600 Gossypium raimondii HOM05D006089 ORTHO05D007345 3.0e-17 92.4 48 83.3
VMungo1383G3667 Vigna mungo HOM05D006089 ORTHO05D007345 3.0e-17 92.4 67 58.2
FAN03G1053 Fragaria x ananassa HOM05D006089 ORTHO05D007345 5.2e-17 91.7 67 59.7
Atru.chr3.879 Acer truncatum HOM05D006089 ORTHO05D007345 6.8e-17 91.3 49 81.6
MD07G1110600 Malus domestica HOM05D006089 ORTHO05D007345 6.8e-17 91.3 49 81.6
Thecc.01G387500 Theobroma cacao HOM05D006089 ORTHO05D007345 6.8e-17 91.3 48 83.3
Eucgr.E01594 Eucalyptus grandis HOM05D006089 ORTHO05D007345 8.9e-17 90.9 64 65.6
Potri.014G056800 Populus trichocarpa HOM05D006089 ORTHO05D007345 1.2e-16 90.5 48 81.2
Ciclev10027500m.g Citrus clementina HOM05D006089 ORTHO05D007345 1.5e-16 90.1 58 70.7
Glyma.11G161947 Glycine max HOM05D006089 ORTHO05D007345 2.0e-16 89.7 50 74.0
GSVIVG01018217001 Vitis vinifera HOM05D006089 ORTHO05D007345 2.0e-16 89.7 48 83.3
DCAR_031889 Daucus carota HOM05D006089 ORTHO05D007345 3.4e-16 89.0 57 73.7
Manes.05G051700 Manihot esculenta HOM05D006089 ORTHO05D007345 3.4e-16 89.0 48 81.2
Nn1g00934 Nelumbo nucifera HOM05D006089 ORTHO05D007345 3.4e-16 89.0 50 76.0
Atru.chr3.880 Acer truncatum HOM05D006089 ORTHO05D007345 4.4e-16 88.6 49 79.6
Cpa.g.sc22.7 Carica papaya HOM05D006089 ORTHO05D007345 7.5e-16 87.8 79 55.7
Aqoxy1G01632 Aquilegia oxysepala HOM05D006089 ORTHO05D007345 9.8e-16 87.4 65 63.1
RcHm_v2.0_Chr1g0342921 Rosa chinensis HOM05D006089 ORTHO05D007345 1.3e-15 87.0 68 60.3
Actinidia22779 Actinidia chinensis HOM05D006089 ORTHO05D007345 1.7e-15 86.7 48 77.1
Actinidia22834 Actinidia chinensis HOM05D006089 ORTHO05D007345 1.7e-15 86.7 48 77.1
CAN.G899.28 Capsicum annuum HOM05D006089 ORTHO05D007345 1.7e-15 86.7 92 47.8
Lj1g0018675 Lotus japonicus HOM05D006089 ORTHO05D007345 1.7e-15 86.7 65 58.5
Nitab4.5_0004415g0050 Nicotiana tabacum HOM05D006089 ORTHO05D007345 1.7e-15 86.7 92 47.8
HanXRQChr13g0422761 Helianthus annuus HOM05D006089 ORTHO05D007345 2.8e-15 85.9 65 58.5
THA.LOC104817203 Tarenaya hassleriana HOM05D006089 ORTHO05D007345 3.7e-15 85.5 67 55.2
Aqoxy5G04142 Aquilegia oxysepala HOM05D006089 ORTHO05D007345 4.9e-15 85.1 65 61.5
arahy.Tifrunner.gnm1.ann1.6Q8RNL Arachis hypogaea HOM05D006089 ORTHO05D007345 4.9e-15 85.1 48 75.0
arahy.Tifrunner.gnm1.ann1.CQPK1H Arachis hypogaea HOM05D006089 ORTHO05D007345 4.9e-15 85.1 48 75.0
CsaV3_6G008730 Cucumis sativus L. HOM05D006089 ORTHO05D007345 4.9e-15 85.1 67 53.7
ClCG06G002420 Citrullus lanatus HOM05D006089 ORTHO05D007345 6.3e-15 84.7 65 56.9
COL.COLO4_12447 Corchorus olitorius HOM05D006089 ORTHO05D007345 6.3e-15 84.7 44 84.1
Migut.B01565 Erythranthe guttata HOM05D006089 ORTHO05D007345 6.3e-15 84.7 59 61.0
Carub.0004s2759 Capsella rubella HOM05D006089 ORTHO05D007345 1.4e-14 83.6 62 59.7
ECA240G4128 Erigeron canadensis HOM05D006089 ORTHO05D007345 1.4e-14 83.6 65 56.9
ATR0057G126 Amborella trichopoda HOM05D006089 ORTHO05D007345 2.4e-14 82.8 78 47.4
AL4G44090 Arabidopsis lyrata HOM05D006089 ORTHO05D007345 2.4e-14 82.8 50 66.0
Nitab4.5_0003110g0040 Nicotiana tabacum HOM05D006089 ORTHO05D007345 2.4e-14 82.8 92 46.7
Sopen01g036390 Solanum pennellii HOM05D006089 ORTHO05D007345 2.4e-14 82.8 48 72.9
PGSC0003DMG400026032 Solanum tuberosum HOM05D006089 ORTHO05D007345 2.4e-14 82.8 48 72.9
Cc02_g24750 Coffea canephora HOM05D006089 ORTHO05D007345 3.1e-14 82.4 47 74.5
SGA_v2.0_scaffold52G19204 Striga asiatica HOM05D006089 ORTHO05D007345 3.1e-14 82.4 51 68.6
TPR.G39066 Trifolium pratense HOM05D006089 ORTHO05D007345 3.1e-14 82.4 65 56.9
Lalb_Chr03g0040071 Lupinus albus HOM05D006089 ORTHO05D007345 4.1e-14 82.0 45 73.3
Aa31LG1G26580 Aethionema arabicum HOM05D006089 ORTHO05D007345 5.4e-14 81.6 50 68.0
CARHR140250 Cardamine hirsuta HOM05D006089 ORTHO05D007345 5.4e-14 81.6 50 64.0
Lsat_1_v5_gn_3_130581 Lactuca sativa HOM05D006089 ORTHO05D007345 5.4e-14 81.6 67 55.2
PSO478G2689 Papaver somniferum HOM05D006089 ORTHO05D007345 5.4e-14 81.6 49 71.4
PSO782G3316 Papaver somniferum HOM05D006089 ORTHO05D007345 5.4e-14 81.6 49 71.4
Sp4g27060 Schrenkiella parvula HOM05D006089 ORTHO05D007345 5.4e-14 81.6 50 68.0
unitig_26.g8876 Utricularia gibba HOM05D006089 ORTHO05D007345 7.0e-14 81.3 58 62.1
Zm00001eb074640 Zea mays HOM05D006089 ORTHO05D007345 7.0e-14 81.3 93 41.9
Lsat_1_v5_gn_3_130781 Lactuca sativa HOM05D006089 ORTHO05D007345 9.2e-14 80.9 88 46.6
Oeu002553.1 Olea europaea HOM05D006089 ORTHO05D007345 9.2e-14 80.9 80 48.8
Ca_02316_v3 Cicer arietinum L. HOM05D006089 ORTHO05D007345 1.6e-13 80.1 80 47.5
vmacro13470 Vaccinium macrocarpon HOM05D006089 ORTHO05D007345 1.6e-13 80.1 47 72.3
Medtr7g045370 Medicago truncatula HOM05D006089 ORTHO05D007345 2.0e-13 79.7 81 49.4
RcHm_v2.0_Chr1g0348141 Rosa chinensis HOM05D006089 ORTHO05D007345 2.0e-13 79.7 67 53.7
BcaC02g07127 Brassica carinata HOM05D006089 ORTHO05D007345 2.7e-13 79.3 50 64.0
A04p33590 Brassica napus HOM05D006089 ORTHO05D007345 2.7e-13 79.3 50 64.0
C04p71360 Brassica napus HOM05D006089 ORTHO05D007345 2.7e-13 79.3 50 64.0
Lsat_1_v5_gn_3_129760 Lactuca sativa HOM05D006089 ORTHO05D007345 2.7e-13 79.3 66 56.1
Peaxi162Scf00377g00829 Petunia axillaris HOM05D006089 ORTHO05D007345 2.7e-13 79.3 80 46.2
SEGI_10037 Sequoiadendron giganteum HOM05D006089 ORTHO05D007345 2.7e-13 79.3 47 74.5
SalBow5G0249 Salvia bowleyana HOM05D006089 ORTHO05D007345 3.5e-13 79.0 48 70.8
Os04g0550600 Oryza sativa ssp. japonica HOM05D006089 ORTHO05D007345 5.9e-13 78.2 67 50.7
CDE11G1089 Ceratophyllum demersum HOM05D006089 ORTHO05D007345 1.7e-12 76.6 65 49.2
BraA04t18821Z Brassica rapa HOM05D006089 ORTHO05D007345 1.2e-10 70.5 45 64.4
BolC4t28641H Brassica oleracea HOM05D006089 ORTHO05D007345 6.1e-10 68.2 44 63.6
AagrBONN_evm.TU.Sc2ySwM_117.1981 Anthoceros agrestis HOM05D006089 ORTHO05D007345 4.0e-09 65.5 64 50.0
HPP92_014493 Vanilla planifolia HOM05D006089 ORTHO05D007345 5.2e-09 65.1 43 69.8
AUR62004137 Chenopodium quinoa HOM05D006089 ORTHO05D007345 8.9e-09 64.3 47 63.8
Sc26g0001370 Simmondsia chinensis HOM05D006089 ORTHO05D007345 8.9e-09 64.3 52 55.8
AUR62013699 Chenopodium quinoa HOM05D006089 ORTHO05D007345 2.0e-08 63.2 47 61.7
EL10Ac1g00808 Beta vulgaris HOM05D006089 ORTHO05D007345 3.7e-07 58.9 47 55.3
SMO165G0127 Selaginella moellendorffii HOM05D006089 ORTHO05D007345 1.1e-06 57.4 55 45.5
AT2G44990 Arabidopsis thaliana HOM05D006089 ORTHO05D007345 4.1e-06 55.5 86 36.0


User provided reference genes

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