Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.3e-59 231.9 106 100.0
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 7.1e-16 87.4 48 81.2
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 2.7e-15 85.5 37 100.0
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 6.0e-15 84.3 48 75.0
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 6.0e-15 84.3 48 75.0
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 7.8e-15 84.0 48 75.0
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 1.7e-14 82.8 48 75.0
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 2.3e-14 82.4 48 75.0
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.3e-14 82.4 48 72.9
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 3.0e-14 82.0 48 72.9
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 3.9e-14 81.6 48 72.9
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 3.9e-14 81.6 48 70.8
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.9e-14 81.6 48 70.8
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.9e-14 81.6 48 70.8
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.9e-14 81.6 48 70.8
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 3.9e-14 81.6 48 72.9
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 5.1e-14 81.3 48 72.9
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 5.1e-14 81.3 48 72.9
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 5.1e-14 81.3 48 70.8
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 5.1e-14 81.3 48 70.8
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 5.1e-14 81.3 48 68.8
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 5.1e-14 81.3 48 70.8
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 5.1e-14 81.3 48 72.9
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 5.1e-14 81.3 48 72.9
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 6.6e-14 80.9 48 70.8
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 6.6e-14 80.9 48 70.8
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 6.6e-14 80.9 48 70.8
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 6.6e-14 80.9 48 70.8
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 6.6e-14 80.9 48 70.8
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 6.6e-14 80.9 48 70.8
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 6.6e-14 80.9 48 72.9
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 8.6e-14 80.5 48 70.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 8.6e-14 80.5 48 70.8
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 8.6e-14 80.5 48 70.8
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 8.6e-14 80.5 48 70.8
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 8.6e-14 80.5 48 70.8
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 8.6e-14 80.5 48 70.8
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 8.6e-14 80.5 48 70.8
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.1e-13 80.1 48 70.8
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 1.1e-13 80.1 48 70.8
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.5e-13 79.7 48 70.8
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 1.5e-13 79.7 37 89.2
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.5e-13 79.7 48 72.9
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.5e-13 79.7 37 89.2
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.9e-13 79.3 37 86.5
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.9e-13 79.3 37 89.2
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 1.9e-13 79.3 48 70.8
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.5e-13 79.0 48 68.8
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 2.5e-13 79.0 48 70.8
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 3.3e-13 78.6 48 68.8
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 3.3e-13 78.6 48 70.8
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 3.3e-13 78.6 48 68.8
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 3.3e-13 78.6 48 68.8
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 3.3e-13 78.6 48 70.8
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 4.3e-13 78.2 48 68.8
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 4.3e-13 78.2 48 68.8
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 4.3e-13 78.2 48 68.8
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 4.3e-13 78.2 48 68.8
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.3e-13 78.2 48 66.7
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 4.3e-13 78.2 48 68.8
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 5.6e-13 77.8 48 68.8
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.3e-13 77.4 48 68.8
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 7.3e-13 77.4 48 66.7
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 7.3e-13 77.4 48 68.8
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 7.3e-13 77.4 48 66.7
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 7.3e-13 77.4 48 68.8
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 7.3e-13 77.4 48 66.7
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 7.3e-13 77.4 48 66.7
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 7.3e-13 77.4 47 72.3
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 7.3e-13 77.4 48 68.8
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 7.3e-13 77.4 48 68.8
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 9.5e-13 77.0 48 66.7
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 9.5e-13 77.0 48 66.7
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 9.5e-13 77.0 48 66.7
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.2e-12 76.6 48 66.7
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 1.6e-12 76.3 37 83.8
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 2.1e-12 75.9 48 68.8
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 2.1e-12 75.9 48 68.8
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 2.1e-12 75.9 48 68.8
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.8e-12 75.5 48 64.6
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.8e-12 75.5 48 66.7
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.8e-12 75.5 48 66.7
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 2.8e-12 75.5 48 66.7
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 2.8e-12 75.5 48 68.8
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 2.8e-12 75.5 48 64.6
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 3.6e-12 75.1 48 68.8
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 3.6e-12 75.1 48 66.7
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 3.6e-12 75.1 48 64.6
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 4.7e-12 74.7 48 64.6
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 4.7e-12 74.7 48 64.6
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 4.7e-12 74.7 48 64.6
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 4.7e-12 74.7 48 64.6
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 4.7e-12 74.7 48 64.6
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 4.7e-12 74.7 48 64.6
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 4.7e-12 74.7 54 57.4
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 4.7e-12 74.7 48 64.6
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 4.7e-12 74.7 48 66.7
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 6.2e-12 74.3 54 55.6
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 8.1e-12 73.9 48 64.6
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 8.1e-12 73.9 48 64.6
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 8.1e-12 73.9 48 64.6
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 8.1e-12 73.9 48 62.5
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 8.1e-12 73.9 48 60.4
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 8.1e-12 73.9 47 63.8
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 8.1e-12 73.9 36 83.3
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.1e-11 73.6 48 66.7
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.1e-11 73.6 37 81.1
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.1e-11 73.6 37 81.1
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 1.1e-11 73.6 37 75.7
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.1e-11 73.6 48 66.7
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.4e-11 73.2 48 62.5
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.4e-11 73.2 37 78.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.4e-11 73.2 48 62.5
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 2.3e-11 72.4 51 60.8
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.3e-11 72.4 48 60.4
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 3.1e-11 72.0 37 75.7
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 3.1e-11 72.0 37 78.4
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 3.1e-11 72.0 54 53.7
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 3.1e-11 72.0 37 75.7
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 3.1e-11 72.0 48 62.5
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 4.0e-11 71.6 48 60.4
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 4.0e-11 71.6 48 60.4
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 4.0e-11 71.6 48 58.3
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 4.0e-11 71.6 37 78.4
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 5.2e-11 71.2 48 60.4
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 5.2e-11 71.2 37 75.7
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 5.2e-11 71.2 37 75.7
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 5.2e-11 71.2 48 60.4
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 5.2e-11 71.2 51 58.8
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 5.2e-11 71.2 48 60.4
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 5.2e-11 71.2 51 58.8
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 5.2e-11 71.2 48 60.4
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 5.2e-11 71.2 51 58.8
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 5.2e-11 71.2 48 60.4
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 5.2e-11 71.2 37 75.7
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.2e-11 71.2 64 54.7
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.2e-11 71.2 37 75.7
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 6.8e-11 70.9 48 60.4
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 6.8e-11 70.9 37 75.7
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 8.9e-11 70.5 48 58.3
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.2e-10 70.1 37 73.0
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.2e-10 70.1 48 58.3
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.2e-10 70.1 48 58.3
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 2.0e-10 69.3 37 73.0
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 2.0e-10 69.3 37 73.0
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 9.9e-10 67.0 51 56.9
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.7e-09 66.2 37 70.3
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.7e-09 66.2 37 64.9
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 2.9e-09 65.5 37 70.3
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 3.8e-09 65.1 48 54.2
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 4.9e-09 64.7 37 67.6
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 6.4e-09 64.3 79 40.5
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 9.2e-08 60.5 37 64.9
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 9.2e-08 60.5 48 56.2
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 7.8e-07 57.4 37 62.2
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.3e-06 55.8 37 62.2


User provided reference genes

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