Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 9.4e-73 276.9 158 100.0
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 2.7e-72 275.4 158 99.4
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 3.1e-36 155.6 78 96.2
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 6.4e-29 131.3 74 87.8
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 1.4e-28 130.2 66 95.5
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 1.1e-17 94.0 68 64.7
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 1.5e-17 93.6 65 67.7
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 3.3e-17 92.4 65 66.2
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 5.6e-17 91.7 62 66.1
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 7.3e-17 91.3 65 67.7
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 1.6e-16 90.1 68 63.2
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 2.8e-16 89.4 65 63.1
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 4.7e-16 88.6 66 60.6
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 6.2e-16 88.2 65 63.1
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 1.1e-15 87.4 65 60.0
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.4e-15 87.0 62 62.9
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 1.4e-15 87.0 62 62.9
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 1.8e-15 86.7 61 67.2
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 3.1e-15 85.9 64 62.5
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 3.1e-15 85.9 62 61.3
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 5.2e-15 85.1 62 62.9
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 5.2e-15 85.1 58 69.0
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 6.8e-15 84.7 65 58.5
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.2e-14 84.0 60 65.0
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 1.2e-14 84.0 64 60.9
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 1.5e-14 83.6 62 62.9
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.6e-14 82.8 62 61.3
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 2.6e-14 82.8 65 56.9
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 4.4e-14 82.0 62 59.7
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 7.5e-14 81.3 62 64.5
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 9.8e-14 80.9 59 61.0
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 9.8e-14 80.9 80 52.5
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 1.3e-13 80.5 60 61.7
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 1.3e-13 80.5 57 68.4
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 1.3e-13 80.5 62 62.9
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 1.7e-13 80.1 59 62.7
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 4.9e-13 78.6 62 58.1
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 8.3e-13 77.8 57 61.4
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 1.4e-12 77.0 61 62.3
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.9e-12 76.6 67 55.2
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 1.9e-12 76.6 56 64.3
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 2.4e-12 76.3 64 56.2
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 2.4e-12 76.3 59 54.2
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 5.4e-12 75.1 62 53.2
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 5.4e-12 75.1 62 53.2
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 5.4e-12 75.1 62 53.2
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 5.4e-12 75.1 58 56.9
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 5.4e-12 75.1 57 61.4
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 7.1e-12 74.7 64 56.2
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 9.2e-12 74.3 58 58.6
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 9.2e-12 74.3 58 58.6
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 1.2e-11 73.9 55 67.3
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 1.2e-11 73.9 59 61.0
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.6e-11 73.6 61 52.5
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 1.6e-11 73.6 59 54.2
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 2.1e-11 73.2 61 54.1
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 2.1e-11 73.2 62 51.6
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 2.1e-11 73.2 62 59.7
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 2.7e-11 72.8 64 54.7
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 3.5e-11 72.4 62 51.6
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 4.6e-11 72.0 62 50.0
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 4.6e-11 72.0 58 55.2
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 4.6e-11 72.0 54 64.8
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 4.6e-11 72.0 62 58.1
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 6.0e-11 71.6 55 63.6
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 6.0e-11 71.6 55 63.6
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 6.0e-11 71.6 62 51.6
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 6.0e-11 71.6 64 53.1
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 7.8e-11 71.2 62 58.1
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 7.8e-11 71.2 55 63.6
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 7.8e-11 71.2 54 64.8
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 1.0e-10 70.9 58 56.9
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 1.0e-10 70.9 57 64.9
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 1.0e-10 70.9 58 55.2
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 1.3e-10 70.5 58 56.9
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 1.3e-10 70.5 55 60.0
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.3e-10 70.5 64 53.1
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 1.7e-10 70.1 61 55.7
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 1.7e-10 70.1 55 60.0
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 2.3e-10 69.7 54 61.1
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.3e-10 69.7 59 52.5
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 3.9e-10 68.9 59 54.2
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 5.1e-10 68.6 58 55.2
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 5.1e-10 68.6 58 55.2
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 2.5e-09 66.2 54 59.3
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.3e-09 65.5 62 53.2
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.3e-09 65.5 62 53.2
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 4.3e-09 65.5 64 46.9
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 5.6e-09 65.1 57 52.6
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 5.6e-09 65.1 49 67.3
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 7.3e-09 64.7 62 53.2
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 7.3e-09 64.7 62 53.2
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.6e-08 63.5 56 55.4
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 2.1e-08 63.2 62 53.2
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.1e-08 63.2 62 53.2
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.1e-08 63.2 62 53.2
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 2.1e-08 63.2 60 55.0
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 3.6e-08 62.4 60 53.3
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 4.7e-08 62.0 53 62.3
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 1.1e-07 60.8 62 54.8
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 1.1e-07 60.8 56 50.0
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 6.8e-07 58.2 52 48.1
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 6.8e-07 58.2 59 47.5
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 2.6e-06 56.2 58 51.7
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 3.4e-06 55.8 49 55.1
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 4.4e-06 55.5 59 45.8
MD07G1101100 Malus domestica HOM05D006948 ORTHO05D008703 7.6e-06 54.7 43 60.5


User provided reference genes

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