Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 3.9e-53 211.1 97 100.0
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 6.5e-16 87.4 38 100.0
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.5e-15 85.5 37 100.0
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 1.2e-14 83.2 38 92.1
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.6e-14 82.8 47 74.5
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.6e-14 82.8 47 74.5
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.6e-14 82.8 47 74.5
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.6e-14 82.8 47 74.5
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 2.1e-14 82.4 38 92.1
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 2.1e-14 82.4 47 74.5
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 2.1e-14 82.4 38 89.5
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.1e-14 82.4 38 89.5
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 2.1e-14 82.4 47 72.3
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 2.7e-14 82.0 47 74.5
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 3.5e-14 81.6 38 89.5
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 3.5e-14 81.6 38 89.5
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 3.5e-14 81.6 38 89.5
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.5e-14 81.6 47 72.3
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 3.5e-14 81.6 38 89.5
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 3.5e-14 81.6 38 89.5
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 4.6e-14 81.3 47 72.3
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 4.6e-14 81.3 38 89.5
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 4.6e-14 81.3 38 86.8
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 4.6e-14 81.3 38 89.5
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 4.6e-14 81.3 47 72.3
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.6e-14 81.3 38 86.8
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.6e-14 81.3 38 86.8
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.6e-14 81.3 38 86.8
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 4.6e-14 81.3 38 86.8
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 4.6e-14 81.3 38 86.8
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 4.6e-14 81.3 38 89.5
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 4.6e-14 81.3 38 89.5
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 6.0e-14 80.9 38 89.5
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 6.0e-14 80.9 38 89.5
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 6.0e-14 80.9 37 91.9
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 6.0e-14 80.9 47 72.3
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.9e-14 80.5 38 86.8
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 7.9e-14 80.5 38 86.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 7.9e-14 80.5 38 86.8
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 7.9e-14 80.5 38 86.8
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 7.9e-14 80.5 38 86.8
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 7.9e-14 80.5 38 86.8
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 7.9e-14 80.5 38 86.8
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 7.9e-14 80.5 38 89.5
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 1.0e-13 80.1 38 86.8
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.0e-13 80.1 38 86.8
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 1.0e-13 80.1 38 86.8
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 1.0e-13 80.1 38 86.8
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.3e-13 79.7 38 84.2
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 1.3e-13 79.7 38 86.8
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.8e-13 79.3 38 86.8
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.8e-13 79.3 38 84.2
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 1.8e-13 79.3 47 70.2
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.3e-13 79.0 38 84.2
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 2.3e-13 79.0 38 84.2
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.0e-13 78.6 38 81.6
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 3.9e-13 78.2 38 84.2
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.9e-13 78.2 38 84.2
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 3.9e-13 78.2 38 84.2
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 3.9e-13 78.2 38 84.2
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.9e-13 78.2 38 84.2
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 3.9e-13 78.2 38 81.6
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 3.9e-13 78.2 37 89.2
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 5.1e-13 77.8 38 81.6
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 5.1e-13 77.8 38 81.6
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 5.1e-13 77.8 38 84.2
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 5.1e-13 77.8 38 81.6
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 6.7e-13 77.4 38 81.6
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 6.7e-13 77.4 38 81.6
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 6.7e-13 77.4 38 81.6
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 6.7e-13 77.4 38 81.6
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 6.7e-13 77.4 47 70.2
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 6.7e-13 77.4 47 70.2
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 8.7e-13 77.0 37 89.2
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 8.7e-13 77.0 38 81.6
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 8.7e-13 77.0 38 84.2
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.1e-12 76.6 38 81.6
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.1e-12 76.6 38 81.6
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 1.5e-12 76.3 38 84.2
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.5e-12 76.3 38 84.2
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.5e-12 76.3 38 84.2
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.9e-12 75.9 38 84.2
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.9e-12 75.9 38 84.2
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.9e-12 75.9 38 81.6
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.9e-12 75.9 38 78.9
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 2.5e-12 75.5 38 78.9
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.5e-12 75.5 38 78.9
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.5e-12 75.5 38 81.6
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 2.5e-12 75.5 38 81.6
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 2.5e-12 75.5 38 76.3
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.5e-12 75.5 38 81.6
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 2.5e-12 75.5 37 83.8
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 3.3e-12 75.1 38 78.9
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 3.3e-12 75.1 38 78.9
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 3.3e-12 75.1 38 78.9
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 3.3e-12 75.1 38 78.9
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 3.3e-12 75.1 38 78.9
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 3.3e-12 75.1 38 78.9
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 3.3e-12 75.1 38 78.9
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.3e-12 75.1 38 76.3
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 5.7e-12 74.3 38 78.9
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 5.7e-12 74.3 38 78.9
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 5.7e-12 74.3 38 81.6
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.7e-12 74.3 47 68.1
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 5.7e-12 74.3 38 78.9
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 5.7e-12 74.3 38 76.3
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 5.7e-12 74.3 47 66.0
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 7.4e-12 73.9 38 76.3
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 7.4e-12 73.9 38 76.3
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 7.4e-12 73.9 38 76.3
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 7.4e-12 73.9 38 78.9
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 7.4e-12 73.9 38 78.9
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 7.4e-12 73.9 38 76.3
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 7.4e-12 73.9 38 76.3
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 9.7e-12 73.6 38 73.7
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.3e-11 73.2 38 76.3
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.3e-11 73.2 38 76.3
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 1.3e-11 73.2 38 76.3
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.3e-11 73.2 38 76.3
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.3e-11 73.2 38 76.3
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.3e-11 73.2 38 76.3
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.6e-11 72.8 37 78.4
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.6e-11 72.8 38 73.7
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.6e-11 72.8 38 73.7
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.6e-11 72.8 38 76.3
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 1.6e-11 72.8 38 73.7
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 1.6e-11 72.8 38 76.3
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.2e-11 72.4 38 73.7
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 2.2e-11 72.4 38 73.7
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 2.2e-11 72.4 38 73.7
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 2.2e-11 72.4 38 73.7
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 2.2e-11 72.4 38 73.7
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 2.2e-11 72.4 38 73.7
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.8e-11 72.0 38 73.7
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.7e-11 71.6 38 71.1
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 3.7e-11 71.6 38 73.7
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 4.8e-11 71.2 38 73.7
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 4.8e-11 71.2 38 71.1
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 4.8e-11 71.2 38 71.1
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 4.8e-11 71.2 38 71.1
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.8e-11 71.2 54 63.0
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 4.8e-11 71.2 38 73.7
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 4.8e-11 71.2 38 71.1
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 4.8e-11 71.2 38 71.1
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 4.8e-11 71.2 38 73.7
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 4.1e-10 68.2 38 71.1
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 4.1e-10 68.2 38 65.8
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 6.9e-10 67.4 38 71.1
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 9.0e-10 67.0 47 57.4
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.2e-09 66.6 38 68.4
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.6e-09 65.5 47 55.3
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 2.2e-08 62.4 38 65.8
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 2.2e-08 62.4 47 59.6
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 8.5e-08 60.5 38 68.4
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.9e-07 59.3 38 63.2
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 5.5e-07 57.8 38 63.2


User provided reference genes

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