Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 5.8e-52 207.2 101 100.0
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 1.2e-36 156.4 78 96.2
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 1.2e-36 156.4 78 96.2
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 8.7e-32 140.2 79 89.9
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 4.1e-29 131.3 76 85.5
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 5.5e-18 94.4 70 62.9
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 1.6e-17 92.8 91 52.7
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 3.6e-17 91.7 83 57.8
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 4.7e-17 91.3 81 59.3
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 6.1e-17 90.9 78 61.5
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 7.9e-17 90.5 79 57.0
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.0e-16 90.1 79 54.4
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 1.4e-16 89.7 78 60.3
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 1.4e-16 89.7 78 61.5
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 3.9e-16 88.2 79 58.2
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 5.1e-16 87.8 79 58.2
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 6.7e-16 87.4 81 58.0
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 6.7e-16 87.4 79 55.7
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 1.5e-15 86.3 78 56.4
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 2.0e-15 85.9 78 60.3
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 2.0e-15 85.9 61 67.2
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 4.4e-15 84.7 79 54.4
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 5.7e-15 84.3 79 55.7
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 5.7e-15 84.3 79 55.7
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 7.4e-15 84.0 58 69.0
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 1.7e-14 82.8 64 59.4
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 2.2e-14 82.4 79 53.2
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.8e-14 82.0 62 59.7
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 6.3e-14 80.9 60 61.7
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 8.2e-14 80.5 79 51.9
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 1.1e-13 80.1 82 48.8
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 1.4e-13 79.7 60 61.7
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.4e-13 79.7 62 58.1
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.4e-13 79.7 59 61.0
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 1.8e-13 79.3 57 68.4
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 1.8e-13 79.3 78 52.6
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 1.8e-13 79.3 62 62.9
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 4.1e-13 78.2 82 51.2
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 4.1e-13 78.2 84 48.8
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 1.6e-12 76.3 79 55.7
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.6e-12 76.3 76 48.7
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.6e-12 76.3 79 51.9
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 2.0e-12 75.9 84 47.6
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 2.0e-12 75.9 79 49.4
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 2.0e-12 75.9 59 55.9
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 3.5e-12 75.1 56 64.3
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 4.5e-12 74.7 79 46.8
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 5.9e-12 74.3 80 46.2
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 5.9e-12 74.3 78 53.8
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 5.9e-12 74.3 79 53.2
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 5.9e-12 74.3 72 54.2
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 5.9e-12 74.3 57 57.9
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 7.7e-12 73.9 58 56.9
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 7.7e-12 73.9 78 50.0
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 7.7e-12 73.9 77 48.1
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 1.7e-11 72.8 69 53.6
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 1.7e-11 72.8 69 53.6
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 1.7e-11 72.8 79 46.8
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 2.2e-11 72.4 77 49.4
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 2.9e-11 72.0 91 47.3
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 2.9e-11 72.0 79 51.9
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 3.8e-11 71.6 79 46.8
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 5.0e-11 71.2 75 54.7
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 5.0e-11 71.2 72 50.0
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 5.0e-11 71.2 62 58.1
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 6.5e-11 70.9 77 53.2
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 6.5e-11 70.9 82 43.9
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 6.5e-11 70.9 54 64.8
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 6.5e-11 70.9 79 50.6
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 8.5e-11 70.5 67 49.3
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 8.5e-11 70.5 79 45.6
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.1e-10 70.1 55 63.6
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 1.1e-10 70.1 55 63.6
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 1.1e-10 70.1 54 64.8
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.5e-10 69.7 55 63.6
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 1.5e-10 69.7 78 48.7
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.5e-10 69.7 79 50.6
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 1.9e-10 69.3 79 46.8
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 2.5e-10 68.9 55 60.0
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 2.5e-10 68.9 80 47.5
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 3.2e-10 68.6 75 56.0
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 5.5e-10 67.8 80 47.5
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.1e-09 65.9 79 45.6
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.1e-09 65.9 79 45.6
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 2.7e-09 65.5 79 48.1
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 3.6e-09 65.1 54 59.3
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 4.7e-09 64.7 57 54.4
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 8.0e-09 63.9 49 67.3
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.0e-08 63.5 82 46.3
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.0e-08 63.5 82 46.3
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.8e-08 62.8 82 46.3
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.8e-08 62.8 82 46.3
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 4.0e-08 61.6 60 53.3
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 4.0e-08 61.6 70 47.1
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 5.2e-08 61.2 82 46.3
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.2e-08 61.2 82 46.3
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.2e-08 61.2 82 46.3
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 6.7e-08 60.8 53 62.3
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 6.7e-08 60.8 60 53.3
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 6.7e-08 60.8 76 44.7
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 8.8e-08 60.5 56 51.8
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 7.5e-07 57.4 52 48.1
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 2.8e-06 55.5 69 43.5
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 3.7e-06 55.1 58 51.7
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 4.8e-06 54.7 49 55.1


User provided reference genes

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