Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.7e-189 666.0 382 100.0
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 4.8e-147 525.0 405 75.3
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 1.6e-131 473.4 390 67.9
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 3.3e-124 449.1 383 66.1
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 4.8e-123 445.3 338 70.4
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 5.3e-122 441.8 331 69.2
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.0e-120 437.6 397 61.5
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 2.9e-120 436.0 331 68.0
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 1.9e-119 433.3 343 69.7
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 2.5e-119 433.0 408 59.8
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 2.5e-119 433.0 329 69.6
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 1.6e-118 430.3 406 61.1
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 1.4e-117 427.2 336 70.2
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.1e-116 424.1 397 62.5
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.5e-116 423.7 330 68.8
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.5e-116 423.7 328 68.3
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 3.3e-116 422.5 410 57.6
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 5.7e-116 421.8 343 66.8
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 9.7e-116 421.0 330 68.5
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 1.3e-115 420.6 326 69.0
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 3.7e-115 419.1 324 67.9
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 5.3e-114 415.2 319 68.3
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 1.5e-113 413.7 322 68.0
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 3.5e-113 412.5 421 59.1
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 5.9e-113 411.8 329 68.4
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 7.7e-113 411.4 335 66.6
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.0e-112 411.0 379 61.7
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.2e-112 409.8 316 68.0
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 2.2e-112 409.8 404 56.9
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 2.9e-112 409.5 329 66.0
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 5.0e-112 408.7 329 65.0
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 5.0e-112 408.7 394 59.4
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 5.0e-112 408.7 326 67.5
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 8.5e-112 407.9 413 56.9
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 8.5e-112 407.9 399 57.6
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 1.9e-111 406.8 337 65.0
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 7.2e-111 404.8 411 57.9
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.2e-110 404.1 330 64.8
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.1e-110 403.3 411 56.9
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 2.7e-110 402.9 336 65.5
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.0e-110 401.4 411 56.7
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 1.8e-109 400.2 416 56.0
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.3e-109 399.8 355 62.3
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 2.3e-109 399.8 315 67.3
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 3.9e-109 399.1 405 58.3
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 8.8e-109 397.9 417 57.1
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.5e-108 397.1 328 64.6
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 5.7e-108 395.2 404 57.9
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 5.7e-108 395.2 329 64.7
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 9.7e-108 394.4 338 63.3
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 1.3e-107 394.0 397 59.2
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 1.7e-107 393.7 350 60.6
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 1.7e-107 393.7 332 64.5
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 2.2e-107 393.3 332 64.2
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 3.7e-107 392.5 330 63.9
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.4e-106 390.6 330 63.3
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.4e-106 390.6 406 57.1
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 2.6e-105 386.3 406 56.4
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 4.5e-105 385.6 337 61.7
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 7.7e-105 384.8 329 62.6
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 2.2e-104 383.3 331 63.4
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 5.0e-104 382.1 326 62.6
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 5.0e-104 382.1 333 62.2
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 8.5e-104 381.3 330 62.1
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 1.1e-103 380.9 326 63.5
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 4.2e-103 379.0 330 62.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 9.4e-103 377.9 368 57.9
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 9.4e-103 377.9 326 62.0
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 6.1e-102 375.2 326 61.7
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 1.0e-101 374.4 330 60.6
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 3.0e-101 372.9 334 61.1
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.0e-101 372.9 401 55.1
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 4.0e-101 372.5 323 61.3
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 4.0e-101 372.5 327 61.5
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 5.2e-101 372.1 406 52.7
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 2.0e-100 370.2 331 59.8
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 2.0e-100 370.2 340 58.2
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 4.4e-100 369.0 323 61.0
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 4.4e-100 369.0 323 61.0
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 4.4e-100 369.0 352 58.2
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 5.7e-100 368.6 397 53.7
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 9.8e-100 367.9 338 59.2
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 1.3e-99 367.5 339 60.5
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 4.1e-98 362.5 308 62.7
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 7.0e-98 361.7 290 66.6
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 9.1e-98 361.3 335 60.6
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 2.7e-97 359.8 301 63.5
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 5.9e-97 358.6 337 60.5
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 5.9e-97 358.6 337 60.8
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 2.2e-96 356.7 350 57.1
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 3.8e-96 355.9 343 58.6
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 5.0e-96 355.5 311 61.4
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 8.5e-96 354.8 349 57.3
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 1.1e-95 354.4 332 59.9
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 3.2e-95 352.8 326 58.6
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 4.2e-95 352.4 293 64.2
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 5.5e-95 352.1 359 56.8
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.2e-94 350.9 286 64.3
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 1.6e-94 350.5 286 65.7
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.7e-94 349.0 523 43.8
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 4.7e-94 349.0 415 53.5
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 2.3e-93 346.7 314 61.1
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 1.3e-91 340.9 347 55.6
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.7e-89 333.2 288 63.5
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 7.7e-89 331.6 298 59.7
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 5.0e-88 328.9 385 48.3
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 6.1e-86 322.0 298 58.4
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 5.7e-84 315.5 332 54.2
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.6e-81 307.4 310 56.5
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 8.9e-77 291.6 304 53.9
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 6.2e-70 268.9 288 55.6
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.6e-65 254.2 225 62.2
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 5.2e-61 239.2 225 56.4
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 1.2e-60 238.0 376 41.5
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 6.4e-59 232.3 323 41.8
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 7.8e-57 225.3 215 58.6
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 1.9e-55 220.7 312 45.8
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 3.4e-44 183.3 136 72.8
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 6.4e-43 179.1 239 49.0
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 2.4e-42 177.2 174 58.0
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.9e-40 169.9 234 44.9
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 4.3e-39 166.4 201 53.2
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.6e-38 163.3 111 73.0
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 3.1e-37 160.2 111 78.4
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 4.0e-37 159.8 381 36.2
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 9.0e-37 158.7 156 58.3
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 8.4e-35 152.1 342 37.7
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 9.3e-34 148.7 305 36.1
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.2e-33 148.3 274 36.1
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 3.9e-32 143.3 98 73.5
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 2.5e-26 124.0 166 44.0
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 1.3e-24 118.2 107 59.8
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 7.4e-23 112.5 66 86.4
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.1e-21 106.7 178 45.5
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 5.3e-21 106.3 174 40.8
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 5.9e-20 102.8 65 81.5
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 3.8e-19 100.1 95 57.9
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 5.0e-19 99.8 156 39.1
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 1.4e-18 98.2 59 81.4
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 4.2e-18 96.7 132 47.7
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 4.2e-18 96.7 62 79.0
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 3.5e-17 93.6 400 28.0
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 1.3e-16 91.7 111 53.2
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 3.0e-16 90.5 62 79.0
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 3.9e-16 90.1 62 72.6
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.1e-15 88.6 67 68.7
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.5e-15 88.2 61 70.5
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.9e-15 87.8 68 72.1
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.9e-13 79.3 92 54.3
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 9.0e-13 79.0 325 26.2
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 6.1e-09 66.2 136 33.8
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 1.4e-08 65.1 107 43.9
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 3.3e-07 60.5 60 56.7
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 7.4e-07 59.3 45 66.7


User provided reference genes

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