Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 4.5e-86 321.2 165 100.0
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 9.5e-52 207.2 165 59.4
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 2.8e-51 205.7 165 59.4
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 4.0e-50 201.8 165 58.2
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 2.0e-49 199.5 165 57.0
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 5.8e-49 198.0 165 56.4
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 9.8e-49 197.2 165 55.8
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 3.7e-48 195.3 165 60.0
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 2.4e-47 192.6 167 55.1
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 7.1e-47 191.0 168 54.8
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 2.7e-46 189.1 161 57.8
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 2.7e-46 189.1 160 55.0
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 2.7e-46 189.1 167 54.5
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 3.5e-46 188.7 165 58.2
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 6.0e-46 188.0 163 55.2
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 7.8e-46 187.6 164 57.3
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 1.0e-45 187.2 160 52.5
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 1.3e-45 186.8 165 57.0
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 6.6e-45 184.5 159 56.0
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 8.6e-45 184.1 160 52.5
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 1.1e-44 183.7 160 51.9
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 1.5e-44 183.3 160 52.5
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 1.9e-44 183.0 154 55.2
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 3.3e-44 182.2 156 52.6
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 3.3e-44 182.2 155 54.2
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 4.3e-44 181.8 149 60.4
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 1.2e-43 180.3 158 53.8
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 6.2e-43 177.9 161 55.3
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 6.2e-43 177.9 165 52.7
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 8.1e-43 177.6 158 53.8
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 1.4e-42 176.8 165 52.1
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 1.4e-42 176.8 160 50.0
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 2.3e-42 176.0 153 51.6
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 3.1e-42 175.6 161 53.4
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 4.0e-42 175.3 162 53.1
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 5.2e-42 174.9 163 54.6
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 1.5e-41 173.3 172 49.4
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 1.5e-41 173.3 172 49.4
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 2.6e-41 172.6 159 54.7
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 2.6e-41 172.6 166 50.6
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 2.6e-41 172.6 158 51.3
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 3.4e-41 172.2 170 50.0
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 7.6e-41 171.0 160 51.9
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 1.3e-40 170.2 170 48.8
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 2.2e-40 169.5 161 54.0
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 2.2e-40 169.5 152 51.3
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 2.2e-40 169.5 161 52.2
DCAR_029750 Daucus carota HOM05D002637 ORTHO05D000193 3.8e-40 168.7 153 51.6
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 3.8e-40 168.7 155 51.0
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 3.8e-40 168.7 161 52.2
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 6.4e-40 167.9 182 50.0
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 8.4e-40 167.5 163 52.8
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 1.9e-39 166.4 160 50.6
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 2.4e-39 166.0 155 47.7
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 2.4e-39 166.0 164 50.6
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 5.4e-39 164.9 168 50.0
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 2.7e-38 162.5 152 48.0
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 3.9e-37 158.7 157 48.4
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 6.6e-37 157.9 163 48.5
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 2.5e-36 156.0 166 45.8
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 2.5e-36 156.0 169 47.9
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 3.3e-36 155.6 169 46.7
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 4.3e-36 155.2 157 51.0
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 4.3e-36 155.2 160 47.5
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 1.2e-35 153.7 149 50.3
RcHm_v2.0_Chr1g0347501 Rosa chinensis HOM05D002637 ORTHO05D009046 1.6e-35 153.3 160 47.5
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 2.1e-35 152.9 167 47.3
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 2.8e-35 152.5 147 49.7
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 3.6e-35 152.1 152 50.0
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 4.7e-35 151.8 159 45.9
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 4.7e-35 151.8 149 50.3
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 8.1e-35 151.0 167 46.7
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 1.4e-34 150.2 160 45.0
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 1.4e-34 150.2 147 49.7
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 6.9e-34 147.9 160 44.4
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 6.9e-34 147.9 155 50.3
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 1.2e-33 147.1 144 50.0
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 2.0e-33 146.4 160 47.5
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 3.4e-33 145.6 153 45.1
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 7.6e-33 144.4 163 41.1
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 2.9e-32 142.5 152 47.4
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 2.9e-32 142.5 134 52.2
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 4.9e-32 141.7 147 46.9
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 8.4e-32 141.0 139 47.5
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 1.9e-31 139.8 151 46.4
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 2.1e-30 136.3 162 42.0
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 1.0e-29 134.0 147 48.3
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 1.0e-29 134.0 147 48.3
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 3.9e-29 132.1 122 52.5
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 4.3e-28 128.6 115 53.9
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 2.1e-27 126.3 114 53.5
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 2.8e-27 125.9 130 49.2
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 6.9e-26 121.3 119 48.7
SalBow5G5579 Salvia bowleyana HOM05D002637 ORTHO05D009046 5.8e-25 118.2 162 42.6
Glyma.07G113000 Glycine max HOM05D002637 ORTHO05D009046 4.9e-24 115.2 141 43.3
FAN10G0921 Fragaria x ananassa HOM05D002637 ORTHO05D009046 5.4e-23 111.7 139 44.6
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 2.7e-22 109.4 101 53.5
GSVIVG01018261001 Vitis vinifera HOM05D002637 ORTHO05D009046 1.0e-21 107.5 172 37.2
RcHm_v2.0_Chr1g0347531 Rosa chinensis HOM05D002637 ORTHO05D009046 1.8e-21 106.7 91 59.3
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 3.9e-21 105.5 112 46.4
BolC7t46653H Brassica oleracea HOM05D002637 ORTHO05D009046 8.7e-21 104.4 139 43.2
FAN10G1525 Fragaria x ananassa HOM05D002637 ORTHO05D009046 6.2e-19 98.2 170 37.6
TPR.G39072 Trifolium pratense HOM05D002637 ORTHO05D009046 6.2e-19 98.2 141 41.1
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 1.4e-18 97.1 90 52.2
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 3.1e-18 95.9 98 51.0
Nitab4.5_0003553g0040 Nicotiana tabacum HOM05D002637 ORTHO05D009046 4.0e-18 95.5 165 35.2
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 3.4e-17 92.4 95 47.4
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 4.5e-17 92.0 89 50.6
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.3e-16 90.5 138 34.8
Glyma.18G252700 Glycine max HOM05D002637 ORTHO05D009046 2.2e-16 89.7 79 54.4
HPP92_005363 Vanilla planifolia HOM05D002637 ORTHO05D009046 2.9e-16 89.4 163 34.4
VMungo1383G0183 Vigna mungo HOM05D002637 ORTHO05D009046 6.4e-16 88.2 89 48.3
A03p65120 Brassica napus HOM05D002637 ORTHO05D009046 3.2e-15 85.9 119 43.7
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 4.2e-15 85.5 136 33.8
GSVIVG01018259001 Vitis vinifera HOM05D002637 ORTHO05D009046 1.2e-14 84.0 109 39.4
Zm00001eb230930 Zea mays HOM05D002637 ORTHO05D009046 1.2e-14 84.0 128 35.2
BraA03t15571Z Brassica rapa HOM05D002637 ORTHO05D009046 3.5e-14 82.4 114 44.7
Os02g0126600 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D009046 4.6e-14 82.0 158 29.1
Prupe.2G128500 Prunus persica HOM05D000001 ORTHO05D009896 1.9e-12 76.6 86 51.2
Atru.chr3.216 Acer truncatum HOM05D002637 ORTHO05D009046 5.6e-12 75.1 63 57.1
EL10Ac1g02043 Beta vulgaris HOM05D002637 ORTHO05D009046 1.3e-11 73.9 60 51.7
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 1.1e-07 60.8 157 28.0
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 1.1e-07 60.8 158 28.5
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 3.2e-07 59.3 70 44.3
ECA234G1488 Erigeron canadensis HOM05D005192 ORTHO05D006023 4.2e-07 58.9 163 27.6
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 4.2e-07 58.9 160 26.9
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 5.5e-07 58.5 162 29.6
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 7.1e-07 58.2 163 27.0
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 7.1e-07 58.2 169 29.6
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 7.1e-07 58.2 160 26.2
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 9.3e-07 57.8 161 26.7
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 9.3e-07 57.8 160 26.9
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 1.2e-06 57.4 147 29.3
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 1.2e-06 57.4 150 28.7
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 2.1e-06 56.6 155 29.7
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 2.1e-06 56.6 130 28.5
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 2.1e-06 56.6 150 27.3
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 2.7e-06 56.2 150 27.3
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 2.7e-06 56.2 131 29.0
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 3.5e-06 55.8 155 29.7
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 3.5e-06 55.8 150 27.3
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 3.5e-06 55.8 153 26.1
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 3.5e-06 55.8 150 26.7
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 6.0e-06 55.1 160 26.9
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 6.0e-06 55.1 142 29.6
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 6.0e-06 55.1 124 28.2
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 7.9e-06 54.7 157 26.1
GSVIVG01011324001 Vitis vinifera HOM05D005192 ORTHO05D006023 7.9e-06 54.7 162 26.5


User provided reference genes

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