Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 7.1e-237 823.5 418 100.0
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 3.2e-160 568.9 416 71.9
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 4.6e-159 565.1 412 71.1
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 1.5e-122 443.7 358 64.0
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 1.6e-116 423.7 349 61.6
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 3.4e-114 416.0 350 62.0
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 5.8e-114 415.2 336 63.4
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 9.9e-114 414.5 337 62.9
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 3.8e-113 412.5 365 60.0
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 3.2e-112 409.5 358 61.2
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 9.3e-112 407.9 351 62.1
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 4.6e-111 405.6 350 60.3
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 1.0e-110 404.4 358 60.1
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 1.5e-109 400.6 366 58.2
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 2.8e-108 396.4 365 56.7
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 3.7e-108 396.0 365 58.9
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 1.4e-107 394.0 342 60.2
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 1.8e-107 393.7 369 56.6
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 1.2e-106 391.0 341 60.1
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 2.0e-106 390.2 347 60.8
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.0e-106 390.2 413 52.1
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 2.6e-106 389.8 344 60.5
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.4e-106 389.4 344 59.3
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 7.6e-106 388.3 344 60.2
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.0e-105 387.9 344 59.3
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 1.3e-105 387.5 344 59.0
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 2.9e-105 386.3 344 60.5
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 4.9e-105 385.6 344 59.0
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 1.1e-104 384.4 341 58.4
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 1.4e-104 384.0 361 57.9
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 1.0e-102 377.9 353 58.6
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 3.0e-102 376.3 361 56.5
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 3.9e-102 375.9 412 50.0
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 1.5e-101 374.0 344 58.1
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 2.5e-101 373.2 344 58.4
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 4.3e-101 372.5 349 58.2
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 2.4e-99 366.7 344 57.6
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 3.1e-99 366.3 347 56.8
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 4.1e-99 365.9 347 56.5
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 5.5e-96 355.5 336 58.3
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 5.5e-96 355.5 401 49.4
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 4.6e-95 352.4 354 54.8
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 1.3e-94 350.9 345 54.8
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 5.1e-94 349.0 407 51.1
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 8.7e-94 348.2 252 67.5
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 2.5e-93 346.7 344 53.2
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 4.3e-93 345.9 203 77.8
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 1.3e-92 344.4 337 55.5
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 4.8e-92 342.4 282 58.9
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 6.3e-92 342.0 342 56.1
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 1.4e-91 340.9 356 50.8
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 3.1e-91 339.7 351 54.1
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 4.1e-91 339.3 332 55.4
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 1.5e-90 337.4 349 53.6
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 2.0e-90 337.0 355 52.7
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 3.4e-90 336.3 354 53.4
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 1.0e-89 334.7 407 46.9
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 1.7e-89 334.0 492 42.9
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 8.5e-89 331.6 282 57.8
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 8.5e-89 331.6 340 53.8
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 1.1e-88 331.3 328 56.7
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 1.9e-88 330.5 345 52.8
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 5.5e-88 328.9 293 57.0
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 7.2e-88 328.6 286 57.3
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 9.4e-88 328.2 283 58.0
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 2.7e-87 326.6 356 54.2
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 1.4e-86 324.3 303 55.8
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 7.4e-85 318.5 344 53.5
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 4.1e-83 312.8 357 51.3
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 3.8e-81 306.2 358 48.3
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 1.6e-79 300.8 365 48.5
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 3.0e-78 296.6 290 55.5
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 6.7e-78 295.4 398 44.7
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 2.8e-76 290.0 282 53.2
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 2.8e-76 290.0 279 54.8
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 8.2e-76 288.5 340 47.1
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 1.1e-75 288.1 300 52.0
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 2.2e-73 280.4 351 45.6
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 3.8e-73 279.6 297 51.5
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 1.9e-72 277.3 262 56.1
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 6.1e-71 272.3 367 46.9
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.8e-70 270.8 339 45.7
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 8.8e-70 268.5 353 42.5
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 2.0e-69 267.3 322 44.4
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 9.7e-69 265.0 255 54.5
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 2.2e-68 263.8 359 47.4
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 2.2e-65 253.8 430 41.4
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 5.0e-65 252.7 251 57.4
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 5.0e-65 252.7 256 53.5
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 2.7e-63 246.9 241 54.8
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 4.1e-59 233.0 408 38.0
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 8.6e-57 225.3 592 31.9
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 4.4e-53 213.0 165 61.8
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 3.7e-52 209.9 257 49.0
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 1.4e-51 208.0 332 38.3
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 1.6e-47 194.5 311 37.3
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 4.0e-46 189.9 199 50.3
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 1.2e-45 188.3 218 48.6
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 6.8e-38 162.5 161 50.3
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 6.0e-34 149.4 104 70.2
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 9.9e-29 132.1 327 29.7
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 3.9e-25 120.2 221 38.9
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 9.5e-24 115.5 108 53.7
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 8.9e-22 109.0 114 54.4
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 5.8e-21 106.3 168 33.9
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 2.9e-20 104.0 92 55.4
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 8.4e-20 102.4 90 56.7
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 7.3e-16 89.4 238 28.2
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 9.9e-13 79.0 418 23.7
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 9.9e-13 79.0 37 100.0
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 2.9e-12 77.4 73 54.8
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 1.4e-11 75.1 61 57.4
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 2.1e-10 71.2 60 56.7
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.3e-09 67.8 44 65.9
PRCOL_00003801 Prasinoderma coloniale HOM05D013257 ORTHO05D015313 1.1e-08 65.5 242 26.0
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 8.1e-07 59.3 44 63.6
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 1.4e-06 58.5 141 32.6


User provided reference genes

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