Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p028941 Quercus lobata HOM05D000448 ORTHO05D000291 4.2e-65 251.1 121 100.0
PGR004G2034 Punica granatum HOM05D000448 ORTHO05D000291 1.0e-23 113.6 137 51.8
PGR004G0201 Punica granatum HOM05D000448 ORTHO05D000291 2.6e-22 109.0 137 50.4
Duzib268G1481 Durio zibethinus HOM05D000448 ORTHO05D000291 7.5e-22 107.5 141 47.5
PGR004G2256 Punica granatum HOM05D000448 ORTHO05D000291 4.9e-21 104.8 137 48.2
Duzib138G0994 Durio zibethinus HOM05D000480 ORTHO05D000291 6.4e-21 104.4 127 49.6
CiPaw.13G024500 Carya illinoinensis HOM05D000448 ORTHO05D000291 8.3e-21 104.0 123 52.8
Gorai.008G109800 Gossypium raimondii HOM05D000448 ORTHO05D000291 8.3e-21 104.0 144 44.4
Manes.05G056701 Manihot esculenta HOM05D000448 ORTHO05D000291 8.3e-21 104.0 129 46.5
Gohir.A12G097900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.4e-20 103.2 137 45.3
COL.COLO4_12382 Corchorus olitorius HOM05D000448 ORTHO05D000291 2.4e-20 102.4 137 46.0
Gohir.D12G100900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 3.2e-20 102.1 144 43.8
Prupe.2G121500 Prunus persica HOM05D000448 ORTHO05D000291 3.2e-20 102.1 145 44.8
Manes.05G056601 Manihot esculenta HOM05D000448 ORTHO05D000291 4.1e-20 101.7 125 47.2
Thecc.01G398500 Theobroma cacao HOM05D000448 ORTHO05D000291 5.4e-20 101.3 144 43.1
Sabra14G0035900 Salix brachista HOM05D000448 ORTHO05D000291 7.0e-20 100.9 122 50.0
CANSAT25G1737 Cannabis sativa HOM05D000448 ORTHO05D000291 9.2e-20 100.5 128 47.7
QL04p028629 Quercus lobata HOM05D000448 ORTHO05D000291 1.2e-19 100.1 129 47.3
QL04p028764 Quercus lobata HOM05D000448 ORTHO05D000291 1.2e-19 100.1 129 47.3
RcHm_v2.0_Chr5g0006001 Rosa chinensis HOM05D000448 ORTHO05D000291 1.2e-19 100.1 131 47.3
Thecc.01G399600 Theobroma cacao HOM05D000448 ORTHO05D000291 1.6e-19 99.8 137 42.3
COL.COLO4_12381 Corchorus olitorius HOM05D000448 ORTHO05D000291 2.0e-19 99.4 130 47.7
Thecc.01G399700 Theobroma cacao HOM05D000448 ORTHO05D000291 2.0e-19 99.4 144 42.4
FAN06G3977 Fragaria x ananassa HOM05D000448 ORTHO05D000291 3.5e-19 98.6 130 45.4
QL04p028736 Quercus lobata HOM05D000448 ORTHO05D000291 3.5e-19 98.6 129 47.3
Rhsim01G0141700 Rhododendron simsii HOM05D000448 ORTHO05D000291 3.5e-19 98.6 127 46.5
Sabra14G0036000 Salix brachista HOM05D000448 ORTHO05D000291 4.6e-19 98.2 122 50.0
RcHm_v2.0_Chr1g0345971 Rosa chinensis HOM05D000448 ORTHO05D000291 6.0e-19 97.8 131 46.6
Glyma.18G247600 Glycine max HOM05D000448 ORTHO05D000291 7.8e-19 97.4 126 45.2
QL04p028833 Quercus lobata HOM05D000448 ORTHO05D000291 7.8e-19 97.4 137 43.1
QL04p028951 Quercus lobata HOM05D000448 ORTHO05D000291 7.8e-19 97.4 137 43.1
FvH4_7g09310 Fragaria vesca HOM05D000448 ORTHO05D000291 1.0e-18 97.1 131 45.8
Glyma.18G247650 Glycine max HOM05D000448 ORTHO05D000291 1.0e-18 97.1 126 46.8
Sabra14G0052400 Salix brachista HOM05D000448 ORTHO05D000291 1.0e-18 97.1 122 49.2
FAN03G3153 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.3e-18 96.7 131 45.8
FAN10G1399 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.3e-18 96.7 131 45.8
Potri.014G050532 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.3e-18 96.7 122 49.2
Gohir.D12G101250 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.7e-18 96.3 142 43.0
Eucgr.D01263 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.3e-18 95.9 143 43.4
Gohir.D12G101100 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.3e-18 95.9 122 47.5
Gorai.008G110100 Gossypium raimondii HOM05D000448 ORTHO05D000291 2.3e-18 95.9 122 47.5
Gorai.008G110200 Gossypium raimondii HOM05D000448 ORTHO05D000291 3.0e-18 95.5 137 44.5
Gorai.008G110300 Gossypium raimondii HOM05D000448 ORTHO05D000291 3.0e-18 95.5 142 43.0
Gohir.D12G101200 Gossypium hirsutum HOM05D000448 ORTHO05D000291 6.6e-18 94.4 138 44.2
Gohir.A12G098000 Gossypium hirsutum HOM05D000448 ORTHO05D000291 8.6e-18 94.0 160 39.4
Potri.001G443600 Populus trichocarpa HOM05D000448 ORTHO05D000291 8.6e-18 94.0 137 44.5
GSVIVG01018306001 Vitis vinifera HOM05D000448 ORTHO05D000291 1.1e-17 93.6 126 42.9
Dinv44044 Davidia involucrata HOM05D000448 ORTHO05D000291 1.9e-17 92.8 126 47.6
Cfa011049 Carpinus fangiana HOM05D000448 ORTHO05D000291 5.6e-17 91.3 126 43.7
Eucgr.D01200 Eucalyptus grandis HOM05D000448 ORTHO05D000291 5.6e-17 91.3 130 42.3
Potri.001G444300 Populus trichocarpa HOM05D000448 ORTHO05D000291 7.3e-17 90.9 147 43.5
Gohir.A12G098066 Gossypium hirsutum HOM05D000448 ORTHO05D000291 9.5e-17 90.5 139 43.2
Potri.014G050800 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.2e-16 90.1 173 36.4
Phvul.008G049700 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 2.1e-16 89.4 125 41.6
Hma1.2p1_1623F.1_g294110 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.8e-16 89.0 126 45.2
Hma1.2p1_2969F.1_g331020 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.8e-16 89.0 126 45.2
Thecc.06G183100 Theobroma cacao HOM05D000448 ORTHO05D000291 2.8e-16 89.0 123 44.7
Gohir.D12G101000 Gossypium hirsutum HOM05D000448 ORTHO05D000291 4.7e-16 88.2 123 45.5
Gorai.008G109900 Gossypium raimondii HOM05D000448 ORTHO05D000291 4.7e-16 88.2 123 45.5
GSVIVG01018305001 Vitis vinifera HOM05D000448 ORTHO05D000291 4.7e-16 88.2 126 42.9
QL04p028872 Quercus lobata HOM05D000448 ORTHO05D000291 2.3e-15 85.9 125 44.8
Thecc.01G399100 Theobroma cacao HOM05D000448 ORTHO05D000291 5.2e-15 84.7 135 45.9
Thecc.01G398400 Theobroma cacao HOM05D000448 ORTHO05D000291 1.5e-14 83.2 129 45.7
Thecc.01G399400 Theobroma cacao HOM05D000448 ORTHO05D000291 1.5e-14 83.2 136 44.9
QL04p028761 Quercus lobata HOM05D000448 ORTHO05D000291 1.3e-13 80.1 157 36.3
Thecc.01G399200 Theobroma cacao HOM05D000448 ORTHO05D000291 1.3e-13 80.1 126 46.0
Oeu011248.1 Olea europaea HOM05D000448 ORTHO05D000291 2.2e-13 79.3 136 39.0
Duzib133G0800 Durio zibethinus HOM05D000448 ORTHO05D000291 3.7e-13 78.6 139 37.4
Cfa011048 Carpinus fangiana HOM05D000448 ORTHO05D000291 8.3e-13 77.4 86 47.7
Nn1g06105 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.1e-12 77.0 130 40.0
Sabra14G0038200 Salix brachista HOM05D000448 ORTHO05D000291 2.4e-12 75.9 119 42.9
Gohir.A12G098033 Gossypium hirsutum HOM05D000448 ORTHO05D000291 4.1e-12 75.1 126 38.9
Potri.014G050900 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.2e-11 73.6 89 44.9
QL04p028825 Quercus lobata HOM05D000448 ORTHO05D000291 1.2e-11 73.6 148 35.1
Sabra14G0038000 Salix brachista HOM05D000448 ORTHO05D000291 1.2e-11 73.6 120 43.3
QL04p028978 Quercus lobata HOM05D000448 ORTHO05D000291 1.6e-11 73.2 127 43.3
Gohir.A12G097950 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.1e-11 72.8 110 45.5
Nn7g38091 Nelumbo nucifera HOM05D000448 ORTHO05D000291 3.5e-11 72.0 46 67.4
Thecc.01G399800 Theobroma cacao HOM05D000448 ORTHO05D000291 3.5e-11 72.0 158 31.6
Gohir.D12G096850 Gossypium hirsutum HOM05D000448 ORTHO05D000291 4.6e-11 71.6 104 48.1
QL04p028865 Quercus lobata HOM05D000448 ORTHO05D000291 6.0e-11 71.2 162 34.6
Thecc.01G398600 Theobroma cacao HOM05D000480 ORTHO05D000313 6.0e-11 71.2 158 31.0
Nn7g38168 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.3e-10 70.1 115 43.5
CiPaw.13G024700 Carya illinoinensis HOM05D000448 ORTHO05D000291 3.9e-10 68.6 102 47.1
Nn1g06104 Nelumbo nucifera HOM05D000448 ORTHO05D000291 6.6e-10 67.8 137 36.5
Actinidia21630 Actinidia chinensis HOM05D000480 ORTHO05D000313 8.6e-10 67.4 46 67.4
Thecc.01G398200 Theobroma cacao HOM05D000448 ORTHO05D000291 1.1e-09 67.0 90 47.8
COL.COLO4_10974 Corchorus olitorius HOM05D000448 ORTHO05D000291 1.9e-09 66.2 46 65.2
Hma1.2p1_0632F.1_g192470 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.5e-09 65.9 51 58.8
Migut.B01505 Erythranthe guttata HOM05D000480 ORTHO05D000313 3.3e-09 65.5 46 67.4
Nn5g28713 Nelumbo nucifera HOM05D000448 ORTHO05D000291 4.3e-09 65.1 113 41.6
Potri.014G050700 Populus trichocarpa HOM05D000448 ORTHO05D000291 4.3e-09 65.1 113 41.6
MD12G1231200 Malus domestica HOM05D000480 ORTHO05D000313 5.6e-09 64.7 103 38.8
Sabra16G0198000 Salix brachista HOM05D000448 ORTHO05D000291 5.6e-09 64.7 57 56.1
TAR374G0173 Trochodendron aralioides HOM05D000448 ORTHO05D000313 5.6e-09 64.7 45 64.4
CANSAT25G3728 Cannabis sativa HOM05D000480 ORTHO05D000313 9.5e-09 63.9 45 66.7
MD12G1230900 Malus domestica HOM05D000480 ORTHO05D000313 9.5e-09 63.9 102 38.2
MD12G1231100 Malus domestica HOM05D000480 ORTHO05D000313 9.5e-09 63.9 56 53.6
TAR369G0196 Trochodendron aralioides HOM05D000448 ORTHO05D000291 9.5e-09 63.9 45 64.4
Potri.015G111300 Populus trichocarpa HOM05D000448 ORTHO05D000313 2.1e-08 62.8 105 35.2
TWI14G0350 Tripterygium wilfordii HOM05D000448 ORTHO05D000313 2.1e-08 62.8 47 59.6
QL04p028789 Quercus lobata HOM05D000448 ORTHO05D000291 2.8e-08 62.4 90 45.6
Peaxi162Scf00853g00424 Petunia axillaris HOM05D000480 ORTHO05D000313 3.6e-08 62.0 46 60.9
CANSAT56G2348 Cannabis sativa HOM05D000480 ORTHO05D000313 4.7e-08 61.6 44 61.4
Oeu019260.1 Olea europaea HOM05D007843 ORTHO05D003639 4.7e-08 61.6 50 56.0
CARHR139950 Cardamine hirsuta HOM05D000480 ORTHO05D000313 6.2e-08 61.2 48 56.2
Potri.012G113800 Populus trichocarpa HOM05D000480 ORTHO05D000313 6.2e-08 61.2 54 53.7
COL.COLO4_10975 Corchorus olitorius HOM05D000480 ORTHO05D000313 8.1e-08 60.8 46 60.9
Manes.06G129901 Manihot esculenta HOM05D000448 ORTHO05D000291 8.1e-08 60.8 48 56.2
Thecc.03G145500 Theobroma cacao HOM05D000480 ORTHO05D000313 8.1e-08 60.8 58 46.6
Cpa.g.sc13.223 Carica papaya HOM05D000480 ORTHO05D000313 1.1e-07 60.5 57 45.6
Dinv44040 Davidia involucrata HOM05D000480 ORTHO05D000313 1.1e-07 60.5 43 62.8
PGR004G1040 Punica granatum HOM05D000480 ORTHO05D000313 1.1e-07 60.5 55 47.3
TAR375G0700 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.4e-07 60.1 50 54.0
PGR004G0350 Punica granatum HOM05D000480 ORTHO05D000313 1.8e-07 59.7 55 49.1
PGR146G0003 Punica granatum HOM05D000480 ORTHO05D000313 1.8e-07 59.7 55 49.1
Thecc.03G145400 Theobroma cacao HOM05D000480 ORTHO05D000313 1.8e-07 59.7 44 56.8
Cc02_g25350 Coffea canephora HOM05D000448 ORTHO05D000291 2.3e-07 59.3 46 58.7
Prupe.2G270400 Prunus persica HOM05D000480 ORTHO05D000313 2.3e-07 59.3 92 37.0
QL09p027393 Quercus lobata HOM05D000480 ORTHO05D000313 2.3e-07 59.3 55 49.1
TAR375G1115 Trochodendron aralioides HOM05D000480 ORTHO05D000313 3.1e-07 58.9 50 52.0
A05p04900 Brassica napus HOM05D000480 ORTHO05D000313 4.0e-07 58.5 48 52.1
BolC4t22202H Brassica oleracea HOM05D000480 ORTHO05D000313 4.0e-07 58.5 48 52.1
BraA05t19464Z Brassica rapa HOM05D000480 ORTHO05D000313 4.0e-07 58.5 48 52.1
Cpa.g.sc13.222 Carica papaya HOM05D000448 ORTHO05D000313 4.0e-07 58.5 126 29.4
GSVIVG01017532001 Vitis vinifera HOM05D000097 ORTHO05D000041 4.0e-07 58.5 43 65.1
BcaC02g12275 Brassica carinata HOM05D000480 ORTHO05D000313 5.2e-07 58.2 48 52.1
C04p05720 Brassica napus HOM05D000480 ORTHO05D000313 5.2e-07 58.2 48 52.1
Cpa.g.sc13.225 Carica papaya HOM05D000480 ORTHO05D000313 5.2e-07 58.2 47 53.2
Eucgr.D01212 Eucalyptus grandis HOM05D000480 ORTHO05D000313 6.8e-07 57.8 58 46.6
Sabra12G0082900 Salix brachista HOM05D000480 ORTHO05D000313 6.8e-07 57.8 100 36.0
TAR058G0001 Trochodendron aralioides HOM05D000480 ORTHO05D000313 6.8e-07 57.8 48 62.5
TAR374G0103 Trochodendron aralioides HOM05D000480 ORTHO05D000313 6.8e-07 57.8 48 60.4
TAR374G1496 Trochodendron aralioides HOM05D000480 ORTHO05D000313 6.8e-07 57.8 48 60.4
FAN01G0752 Fragaria x ananassa HOM05D000480 ORTHO05D000313 8.9e-07 57.4 91 36.3
PGR004G0158 Punica granatum HOM05D000480 ORTHO05D000313 8.9e-07 57.4 46 52.2
FAN10G1476 Fragaria x ananassa HOM05D000480 ORTHO05D000313 1.2e-06 57.0 91 35.2
Potri.014G050600 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.2e-06 57.0 113 38.1
TAR374G0960 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.2e-06 57.0 48 60.4
AT5G51160 Arabidopsis thaliana HOM05D000448 ORTHO05D000291 1.5e-06 56.6 56 48.2
Carub.0008s1120 Capsella rubella HOM05D000448 ORTHO05D000291 1.5e-06 56.6 47 55.3
FAN10G1807 Fragaria x ananassa HOM05D000480 ORTHO05D000313 1.5e-06 56.6 70 38.6
MD01G1175400 Malus domestica HOM05D000480 ORTHO05D000313 1.5e-06 56.6 51 45.1
Nn1g09256 Nelumbo nucifera HOM05D000480 ORTHO05D000313 1.5e-06 56.6 95 33.7
Ciclev10033865m.g Citrus clementina HOM05D000448 ORTHO05D000313 2.0e-06 56.2 44 59.1
COL.COLO4_37309 Corchorus olitorius HOM05D000448 ORTHO05D000291 2.0e-06 56.2 47 51.1
Actinidia04972 Actinidia chinensis HOM05D000448 ORTHO05D000291 2.6e-06 55.8 51 51.0
Actinidia25362 Actinidia chinensis HOM05D000480 ORTHO05D000313 2.6e-06 55.8 51 51.0
Dinv39594 Davidia involucrata HOM05D000448 ORTHO05D000291 2.6e-06 55.8 38 73.7
Lj3A769T7 Lonicera japonica HOM05D000480 ORTHO05D000313 2.6e-06 55.8 44 54.5
Actinidia19328 Actinidia chinensis HOM05D000448 ORTHO05D000291 3.4e-06 55.5 47 55.3
AL8G25420 Arabidopsis lyrata HOM05D000448 ORTHO05D000291 3.4e-06 55.5 57 45.6
BcaB02g08854 Brassica carinata HOM05D000480 ORTHO05D000313 3.4e-06 55.5 48 50.0
BcaC01g06095 Brassica carinata HOM05D000448 ORTHO05D000291 3.4e-06 55.5 44 56.8
A03p16260 Brassica napus HOM05D000448 ORTHO05D000291 3.4e-06 55.5 44 56.8
C03p19150 Brassica napus HOM05D000448 ORTHO05D000291 3.4e-06 55.5 44 56.8
BolC3t14303H Brassica oleracea HOM05D000448 ORTHO05D000291 3.4e-06 55.5 44 56.8
BraA03t10917Z Brassica rapa HOM05D000448 ORTHO05D000291 3.4e-06 55.5 44 56.8
CARHR256890 Cardamine hirsuta HOM05D000448 ORTHO05D000291 3.4e-06 55.5 83 37.3
Thhalv10015548m.g Eutrema salsugineum HOM05D000448 ORTHO05D000291 3.4e-06 55.5 44 56.8
FvH4_7g26643 Fragaria vesca HOM05D000480 ORTHO05D000313 3.4e-06 55.5 94 35.1
PSO063G0367 Papaver somniferum HOM05D000480 ORTHO05D000313 3.4e-06 55.5 48 50.0
Peaxi162Scf00103g10113 Petunia axillaris HOM05D000480 ORTHO05D000313 3.4e-06 55.5 55 49.1
QL04p028636 Quercus lobata HOM05D000448 ORTHO05D000291 3.4e-06 55.5 36 77.8
Sp4g26800 Schrenkiella parvula HOM05D000480 ORTHO05D000313 3.4e-06 55.5 43 58.1
GSVIVG01024471001 Vitis vinifera HOM05D000480 ORTHO05D000313 3.4e-06 55.5 50 50.0
Cfa013603 Carpinus fangiana HOM05D000480 ORTHO05D000313 4.4e-06 55.1 48 47.9
Ciclev10031687m.g Citrus clementina HOM05D000480 ORTHO05D000313 4.4e-06 55.1 47 53.2
Haze_22225 Corylus avellana HOM05D004991 ORTHO05D006690 4.4e-06 55.1 48 47.9
Eucgr.L02828 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.4e-06 55.1 121 35.5
RcHm_v2.0_Chr1g0373281 Rosa chinensis HOM05D000480 ORTHO05D000313 4.4e-06 55.1 91 35.2
RcHm_v2.0_Chr2g0133631 Rosa chinensis HOM05D000448 ORTHO05D000291 4.4e-06 55.1 115 35.7
Carub.0004s2730 Capsella rubella HOM05D000480 ORTHO05D000313 5.8e-06 54.7 48 50.0
Eucgr.D01209 Eucalyptus grandis HOM05D000480 ORTHO05D000313 5.8e-06 54.7 49 49.0
Lj3A768T6 Lonicera japonica HOM05D000480 ORTHO05D000313 5.8e-06 54.7 44 56.8
Oeu037434.1 Olea europaea HOM05D000480 ORTHO05D000313 5.8e-06 54.7 43 55.8
Prupe.2G270500 Prunus persica HOM05D000448 ORTHO05D000313 5.8e-06 54.7 47 51.1
Sp6g13370 Schrenkiella parvula HOM05D000448 ORTHO05D000291 5.8e-06 54.7 44 56.8
Dinv44042 Davidia involucrata HOM05D000480 ORTHO05D000313 7.6e-06 54.3 44 54.5
FvH4_7g26641 Fragaria vesca HOM05D000448 ORTHO05D000291 7.6e-06 54.3 47 53.2
Migut.N01729 Erythranthe guttata HOM05D000480 ORTHO05D000313 9.9e-06 53.9 44 52.3
Nn2g15093 Nelumbo nucifera HOM05D000480 ORTHO05D000313 9.9e-06 53.9 43 58.1
PGSC0003DMG400031161 Solanum tuberosum HOM05D000448 ORTHO05D000291 9.9e-06 53.9 52 46.2


User provided reference genes

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